From 830a0fe64e28995991c3a4147ce83fd222ee3a2c Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Fri, 14 Jun 2019 11:47:02 +0200
Subject: [PATCH 01/39] gnu: cups-filters: Update to 1.25.0.

* gnu/packages/cups.scm (cups-filters): Update to 1.25.0.
---
 gnu/packages/cups.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cups.scm b/gnu/packages/cups.scm
index b48da35e8e..b87203cab6 100644
--- a/gnu/packages/cups.scm
+++ b/gnu/packages/cups.scm
@@ -57,7 +57,7 @@ (define-module (gnu packages cups)
 (define-public cups-filters
   (package
     (name "cups-filters")
-    (version "1.23.0")
+    (version "1.25.0")
     (source(origin
               (method url-fetch)
               (uri
@@ -65,7 +65,7 @@ (define-public cups-filters
                               "cups-filters-" version ".tar.xz"))
               (sha256
                (base32
-                "1lyzxf03kdfvkbb6p7hxlarbb35lq5bh094g49v3bz9z4z9065p2"))
+                "1laiscq8yvynw862calkgbz9irrdkmd5l821q6a6wik1ifd186c1"))
               (modules '((guix build utils)))
               (snippet
                ;; install backends, banners and filters to cups-filters output

From 14b53192a4dce71f947d4e44b1676a3eec911bc5 Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Fri, 14 Jun 2019 11:47:21 +0200
Subject: [PATCH 02/39] gnu: libsigc++: Update to 2.10.2.

* gnu/packages/glib.scm (libsigc++): Update to 2.10.2.
---
 gnu/packages/glib.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/glib.scm b/gnu/packages/glib.scm
index 7af7c86853..b5ddc19ef9 100644
--- a/gnu/packages/glib.scm
+++ b/gnu/packages/glib.scm
@@ -482,7 +482,7 @@ (define dbus-glib
 (define libsigc++
   (package
     (name "libsigc++")
-    (version "2.10.1")
+    (version "2.10.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "mirror://gnome/sources/libsigc++/"
@@ -490,7 +490,7 @@ (define libsigc++
                                  name "-" version ".tar.xz"))
              (sha256
               (base32
-               "00v08km4wwzbh6vjxb21388wb9dm6g2xh14rgwabnv4c2wk5z8n9"))))
+               "163s14d1rqp82gc1vsm3q0wzsbdicb9q6307kz0zk5lm6x9h5jmi"))))
     (build-system gnu-build-system)
     (native-inputs `(("pkg-config" ,pkg-config)
                      ("m4" ,m4)))

From 16c38e2b9cf2a004cb1d3425593b8872e5c1f7b4 Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Fri, 14 Jun 2019 11:47:41 +0200
Subject: [PATCH 03/39] gnu: imagemagick: Update to 6.9.10-49.

* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-49.
---
 gnu/packages/imagemagick.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/imagemagick.scm b/gnu/packages/imagemagick.scm
index 16f9a6e4bd..dba193d8e5 100644
--- a/gnu/packages/imagemagick.scm
+++ b/gnu/packages/imagemagick.scm
@@ -48,14 +48,14 @@ (define-public imagemagick
     ;; The 7 release series has an incompatible API, while the 6 series is still
     ;; maintained. Don't update to 7 until we've made sure that the ImageMagick
     ;; users are ready for the 7-series API.
-    (version "6.9.10-46")
+    (version "6.9.10-49")
     (source (origin
              (method url-fetch)
              (uri (string-append "mirror://imagemagick/ImageMagick-"
                                  version ".tar.xz"))
              (sha256
               (base32
-               "1qx3x48q1dy39g1bb8mnyaq9jwy1smf0x6zfly4r0mj3m01i2dyb"))))
+               "1w4vsppyn1h58x3z4hgly5qxp16q66l18y9rwavrravw0kiq64fs"))))
     (build-system gnu-build-system)
     (arguments
      `(#:configure-flags '("--with-frozenpaths" "--without-gcc-arch")

From 753eb4118c974e4e9c685f81c8ffb45fc1be7274 Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Fri, 14 Jun 2019 11:48:10 +0200
Subject: [PATCH 04/39] gnu: python-markupsafe: Update to 1.1.1.

* gnu/packages/python-xyz.scm (python-markupsafe): Update to 1.1.1.
[arguments]: New field.  Override check phase.
[native-inputs]: Add PYTHON-PYTEST.
---
 gnu/packages/python-xyz.scm | 22 ++++++++++++++++++++--
 1 file changed, 20 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index a7c88e9187..ac23e23bc2 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -2298,15 +2298,33 @@ (define-public python2-virtualenv
 (define-public python-markupsafe
   (package
     (name "python-markupsafe")
-    (version "1.0")
+    (version "1.1.1")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "MarkupSafe" version))
        (sha256
         (base32
-         "0rdn1s8x9ni7ss8rfiacj7x1085lx8mh2zdwqslnw8xc3l4nkgm6"))))
+         "0sqipg4fk7xbixqd8kq6rlkxj664d157bdwbh93farcphf92x1r9"))))
     (build-system python-build-system)
+    (arguments
+     `(#:modules ((ice-9 ftw)
+                  (srfi srfi-1)
+                  (srfi srfi-26)
+                  (guix build utils)
+                  (guix build python-build-system))
+       #:phases (modify-phases %standard-phases
+                  (replace 'check
+                    (lambda _
+                      (let ((cwd (getcwd))
+                            (libdir (find (cut string-prefix? "lib." <>)
+                                          (scandir "build"))))
+                      (setenv "PYTHONPATH"
+                              (string-append cwd "/build/" libdir ":"
+                                             (getenv "PYTHONPATH")))
+                      (invoke "pytest" "-vv")))))))
+    (native-inputs
+     `(("python-pytest" ,python-pytest)))
     (home-page "https://github.com/mitsuhiko/markupsafe")
     (synopsis "XML/HTML/XHTML markup safe string implementation for Python")
     (description

From 950c3a2d5ef7b722b24e6529c3819fb3c6fa504f Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Fri, 14 Jun 2019 11:48:52 +0200
Subject: [PATCH 05/39] gnu: python-mako: Update to 1.0.12.

* gnu/packages/python-xyz.scm (python-mako): Update to 1.0.12.
---
 gnu/packages/python-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index ac23e23bc2..e1d0b7f50a 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -8363,14 +8363,14 @@ (define-public python2-xdo
 (define-public python-mako
   (package
     (name "python-mako")
-    (version "1.0.10")
+    (version "1.0.12")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "Mako" version))
        (sha256
         (base32
-         "0r9rysn19fmrxnzfcn7sg20kjhcrx9qri0my9n5vdzp1g2g92rbi"))))
+         "0qj16ai937wrbpv1a9g395gybb9s06rmdj3arbp8fpl37bg6byhc"))))
     (build-system python-build-system)
     (propagated-inputs
      `(("python-markupsafe" ,python-markupsafe)))

From bbeeeb148efdb3e604f44d4e643731c49f46f684 Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Fri, 14 Jun 2019 11:49:12 +0200
Subject: [PATCH 06/39] gnu: Sphinx: Update to 2.1.1.

* gnu/packages/sphinx.scm (python-sphinx): Update to 2.1.1.
---
 gnu/packages/sphinx.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm
index 1bc7149c24..0b86398a68 100644
--- a/gnu/packages/sphinx.scm
+++ b/gnu/packages/sphinx.scm
@@ -45,14 +45,14 @@ (define-module (gnu packages sphinx)
 (define-public python-sphinx
   (package
     (name "python-sphinx")
-    (version "2.0.1")
+    (version "2.1.1")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "Sphinx" version))
        (sha256
         (base32
-         "0js0rnbzm0nsb4gm2v4z79wlbmr05awqzic57kfl8ydkdxj80cj2"))))
+         "1ym150xpzc2nsv8zy77q3q4gxgwfnfvd7459dykzmiw6wxk3250m"))))
     (build-system python-build-system)
     (arguments
      `(#:phases

From 4e8284f031323678f078a15d8af1742332b326e5 Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Fri, 14 Jun 2019 11:49:31 +0200
Subject: [PATCH 07/39] gnu: speexdsp: Update to 1.2.0.

* gnu/packages/xiph.scm (speexdsp): Update to 1.2.0.
---
 gnu/packages/xiph.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/xiph.scm b/gnu/packages/xiph.scm
index 8f900cf90d..804cfd39a7 100644
--- a/gnu/packages/xiph.scm
+++ b/gnu/packages/xiph.scm
@@ -160,14 +160,14 @@ (define speex
 (define speexdsp
   (package
     (name "speexdsp")
-    (version "1.2rc3")
+    (version "1.2.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://downloads.xiph.org/releases/speex/"
                                   "speexdsp-" version ".tar.gz"))
               (sha256
                (base32
-                "1wcjyrnwlkayb20zdhp48y260rfyzg925qpjpljd5x9r01h8irja"))))
+                "0wa7sqpk3x61zz99m7lwkgr6yv62ml6lfgs5xja65vlvdzy44838"))))
     (build-system gnu-build-system)
     (arguments
      `(#:configure-flags '(,@(if (string=? "aarch64-linux"

From d95503ab8273adb3d51cd7de550ea44539803f27 Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Sat, 15 Jun 2019 09:13:48 +0200
Subject: [PATCH 08/39] gnu: libtirpc: Update to 1.1.4.

* gnu/packages/onc-rpc.scm (libtirpc): Update to 1.1.4.
---
 gnu/packages/onc-rpc.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/onc-rpc.scm b/gnu/packages/onc-rpc.scm
index 64887212d3..3f67d91031 100644
--- a/gnu/packages/onc-rpc.scm
+++ b/gnu/packages/onc-rpc.scm
@@ -33,7 +33,7 @@ (define-module (gnu packages onc-rpc)
 (define-public libtirpc
   (package
     (name "libtirpc")
-    (version "1.0.3")
+    (version "1.1.4")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://sourceforge/libtirpc/libtirpc/"
@@ -41,7 +41,7 @@ (define-public libtirpc
                                   version ".tar.bz2"))
               (sha256
                (base32
-                "0ppxl3k3nsz0qdakq844i2kj4fvh9h937lhx26bgmpmxq67sghw6"))))
+                "07anqypf7c719x9y683qz65cxllmzlgmlab2hlahrqcj4bq2k99c"))))
     (build-system gnu-build-system)
     (arguments
      `(#:phases

From fd641a23f5438bb289041d9b738388ad26c5d343 Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Sat, 15 Jun 2019 09:18:51 +0200
Subject: [PATCH 09/39] gnu: libnsl: Do not use unstable tarball.

* gnu/packages/onc-rpc.scm (libnsl)[source]: Switch to GIT-FETCH.
---
 gnu/packages/onc-rpc.scm | 12 +++++++-----
 1 file changed, 7 insertions(+), 5 deletions(-)

diff --git a/gnu/packages/onc-rpc.scm b/gnu/packages/onc-rpc.scm
index 3f67d91031..8f66b07527 100644
--- a/gnu/packages/onc-rpc.scm
+++ b/gnu/packages/onc-rpc.scm
@@ -23,6 +23,7 @@ (define-module (gnu packages onc-rpc)
   #:use-module (guix licenses)
   #:use-module (guix packages)
   #:use-module (guix download)
+  #:use-module (guix git-download)
   #:use-module (gnu packages)
   #:use-module (gnu packages autotools)
   #:use-module (gnu packages gettext)
@@ -105,13 +106,14 @@ (define-public libnsl
     (name "libnsl")
     (version "1.2.0")
     (source (origin
-              (method url-fetch)
-              (uri (string-append "https://github.com/thkukuk/libnsl/archive/v"
-                                  version ".tar.gz"))
-              (file-name (string-append name "-" version ".tar.gz"))
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/thkukuk/libnsl.git")
+                    (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
               (sha256
                (base32
-                "1y6kmxmv1difzvdhx7grqzw0j2v2b74mg4kjb803m8jcgkqqx8m5"))))
+                "1chzqhcgh0yia9js8mh92cmhyka7rh32ql6b3mgdk26n94dqzs8b"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("autoconf" ,autoconf)

From af847bd88f729456b09f26831bd7164e6baae371 Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Sat, 15 Jun 2019 09:22:40 +0200
Subject: [PATCH 10/39] gnu: xorg-server-for-tests: Update to 1.20.5.

* gnu/packages/xorg.scm (xorg-server-for-tests)[source, version]: Remove.
---
 gnu/packages/xorg.scm | 11 +----------
 1 file changed, 1 insertion(+), 10 deletions(-)

diff --git a/gnu/packages/xorg.scm b/gnu/packages/xorg.scm
index 27966f038a..0f2231ca8d 100644
--- a/gnu/packages/xorg.scm
+++ b/gnu/packages/xorg.scm
@@ -5198,16 +5198,7 @@ (define-public xorg-server
 (define-public xorg-server-for-tests
   (hidden-package
    (package
-     (inherit xorg-server)
-     (version "1.20.4")
-     (source (origin
-               (inherit (package-source xorg-server))
-               (uri (string-append
-                     "mirror://xorg/individual/xserver/"
-                     "xorg-server-" version ".tar.bz2"))
-               (sha256
-                (base32
-                 "1vk6j7hmigfill9x8m7a6vvgb3s50ji2yf6yprbgqfz9xf9x83zy")))))))
+     (inherit xorg-server))))
 
 (define-public xorg-server-xwayland
   (package

From eed81080dc6f552e381971ec11cec5de0c58a58d Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Tue, 18 Jun 2019 12:47:37 +0200
Subject: [PATCH 11/39] gnu: python-pygments: Update to 2.4.2.

* gnu/packages/python-xyz.scm (python-pygments): Update to 2.4.2.
---
 gnu/packages/python-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index e1d0b7f50a..466b2d8768 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -2502,14 +2502,14 @@ (define-public python2-docutils
 (define-public python-pygments
   (package
     (name "python-pygments")
-    (version "2.4.0")
+    (version "2.4.2")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "Pygments" version))
        (sha256
         (base32
-         "1xb5n3hvhk63kxypc03k7kfry20pny6gygi4bsl9kw1rnzzsdjri"))))
+         "15v2sqm5g12bqa0c7wikfh9ck2nl97ayizy1hpqhmws5gqalq748"))))
     (build-system python-build-system)
     (arguments
      ;; FIXME: Tests require sphinx, which depends on this.

From 4e24e442f2c9629edf08bef30ec98959da950189 Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Tue, 18 Jun 2019 15:21:14 +0200
Subject: [PATCH 12/39] gnu: python-freezegun: Update to 0.3.12.

* gnu/packages/check.scm (python-freezegun): Update to 0.3.12.
[native-inputs]: Remove PYTHON-NOSE and PYTHON-COVERAGE.  Add PYTHON-PYTEST.
[arguments]: Use "pytest" instead of "nosetests" for running tests.
---
 gnu/packages/check.scm | 9 ++++-----
 1 file changed, 4 insertions(+), 5 deletions(-)

diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm
index 82391ac5e1..e24f2713b4 100644
--- a/gnu/packages/check.scm
+++ b/gnu/packages/check.scm
@@ -2043,18 +2043,17 @@ (define-public python2-nose-timer
 (define-public python-freezegun
   (package
     (name "python-freezegun")
-    (version "0.3.11")
+    (version "0.3.12")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "freezegun" version))
        (sha256
-        (base32 "1nh0fzqjwg88n57k3qa8mxnmiwrr7lqyd5xvc96qn5g8zcxv8fg8"))))
+        (base32 "1rx57v8ryjncjimg8hys9kx1r3rknvwcl4y340g20jn0sf69qk9a"))))
     (build-system python-build-system)
     (native-inputs
      `(("python-mock" ,python-mock)
-       ("python-nose" ,python-nose)
-       ("python-coverage" ,python-coverage)))
+       ("python-pytest" ,python-pytest)))
     (propagated-inputs
      `(("python-six" ,python-six)
        ("python-dateutil" ,python-dateutil)))
@@ -2065,7 +2064,7 @@ (define-public python-freezegun
          ;; package does not include the Makefile.
          (replace 'check
            (lambda _
-             (invoke "nosetests" "./tests/"))))))
+             (invoke "pytest" "-vv"))))))
     (home-page "https://github.com/spulec/freezegun")
     (synopsis "Test utility for mocking the datetime module")
     (description

From 93253411d6a55ebdcd91de2c6eb80e1c9134d12a Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Tue, 18 Jun 2019 15:21:21 +0200
Subject: [PATCH 13/39] gnu: python-babel: Update to 2.7.0.

* gnu/packages/python-xyz.scm (python-babel): Update to 2.7.0.
(python2-babel-2.6): New variable.
* gnu/packages/sphinx.scm (python2-sphinx)[propagated-inputs]: Change
PYTHON2-BABEL to PYTHON2-BABEL-2.6.
---
 gnu/packages/python-xyz.scm | 16 ++++++++++++++--
 gnu/packages/sphinx.scm     |  2 +-
 2 files changed, 15 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 466b2d8768..c072cf574c 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -311,14 +311,14 @@ (define-public python2-clyent
 (define-public python-babel
   (package
     (name "python-babel")
-    (version "2.6.0")
+    (version "2.7.0")
     (source
      (origin
       (method url-fetch)
       (uri (pypi-uri "Babel" version))
       (sha256
        (base32
-        "08rxmbx2s4irp0w0gmn498vns5xy0fagm0fg33xa772jiks51flc"))))
+        "0a7wawx8vsg7igvz6p3x909fskhg4b2y1910xk4f4c8y22p3aqg8"))))
     (build-system python-build-system)
     (native-inputs
      `(("python-freezegun" ,python-freezegun)
@@ -343,6 +343,18 @@ (define-public python-babel
 (define-public python2-babel
   (package-with-python2 python-babel))
 
+;; Sphinx < 2.0 requires this version.  Remove once no longer needed.
+(define-public python2-babel-2.6
+  (package
+    (inherit python2-babel)
+    (version "2.6.0")
+    (source (origin
+              (method url-fetch)
+              (uri (pypi-uri "Babel" version))
+              (sha256
+               (base32
+                "08rxmbx2s4irp0w0gmn498vns5xy0fagm0fg33xa772jiks51flc"))))))
+
 (define-public python2-backport-ssl-match-hostname
   (package
     (name "python2-backport-ssl-match-hostname")
diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm
index 0b86398a68..a9475ab87b 100644
--- a/gnu/packages/sphinx.scm
+++ b/gnu/packages/sphinx.scm
@@ -132,7 +132,7 @@ (define-public python2-sphinx
                            ("python2-imagesize" ,python2-imagesize)
                            ("python2-sphinx-alabaster-theme"
                             ,python2-sphinx-alabaster-theme)
-                           ("python2-babel" ,python2-babel)
+                           ("python2-babel" ,python2-babel-2.6)
                            ("python2-snowballstemmer" ,python2-snowballstemmer)
                            ("python2-docutils" ,python2-docutils)
                            ("python2-jinja2" ,python2-jinja2)

From 71c08ee60bb3f62bac0614888fb62405f7a388ab Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Tue, 18 Jun 2019 15:21:40 +0200
Subject: [PATCH 14/39] gnu: python-pytz: Update to 2019.1.

* gnu/packages/time.scm (python-pytz): Update to 2019.1.
---
 gnu/packages/time.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/time.scm b/gnu/packages/time.scm
index 747e4cf080..9bbfe07803 100644
--- a/gnu/packages/time.scm
+++ b/gnu/packages/time.scm
@@ -92,14 +92,14 @@ (define-public python2-tzdata
 (define-public python-pytz
   (package
     (name "python-pytz")
-    (version "2018.5")
+    (version "2019.1")
     (source
      (origin
       (method url-fetch)
       (uri (pypi-uri "pytz" version ".tar.gz"))
       (sha256
        (base32
-        "0xzj5gkpdn2da8m6j47chlp6zrzcypv9m0fjv4236q3jw4fyzfgz"))))
+        "0hg1r2c41gnmljdsdmdgy6kb1zkfmxsf49imd96g8znp4cyxsiyp"))))
     (build-system python-build-system)
     (home-page "http://pythonhosted.org/pytz")
     (synopsis "Python timezone library")

From 010689e7067df1288af29176f4a8639de816b1ef Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Thu, 20 Jun 2019 23:19:09 +0200
Subject: [PATCH 15/39] gnu: python-sphinx: Update to 2.1.2.

* gnu/packages/sphinx.scm (python-sphinx): Update to 2.1.2.
---
 gnu/packages/sphinx.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm
index a5773c21e5..5ec769388a 100644
--- a/gnu/packages/sphinx.scm
+++ b/gnu/packages/sphinx.scm
@@ -45,14 +45,14 @@ (define-module (gnu packages sphinx)
 (define-public python-sphinx
   (package
     (name "python-sphinx")
-    (version "2.1.1")
+    (version "2.1.2")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "Sphinx" version))
        (sha256
         (base32
-         "1ym150xpzc2nsv8zy77q3q4gxgwfnfvd7459dykzmiw6wxk3250m"))))
+         "09y4mjmbxz94pmfr2lzf1hkx2xk0khcpb8xsqfmir4l7dds9x9zr"))))
     (build-system python-build-system)
     (arguments
      `(#:phases

From 22cc598b1e7c35e5be36a684bfa4474f42fe51f9 Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Fri, 21 Jun 2019 11:55:23 +0200
Subject: [PATCH 16/39] gnu: utf8proc: Update source and home page.

* gnu/packages/textutils.scm (utf8proc)[source, home-page]: Follow
redirected URLs.
---
 gnu/packages/textutils.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/textutils.scm b/gnu/packages/textutils.scm
index 79835e8578..14220b85f1 100644
--- a/gnu/packages/textutils.scm
+++ b/gnu/packages/textutils.scm
@@ -145,7 +145,7 @@ (define-public utf8proc
      (origin
        (method url-fetch)
        (uri (string-append
-             "https://github.com/JuliaLang/utf8proc/archive/v"
+             "https://github.com/JuliaStrings/utf8proc/archive/v"
              version ".tar.gz"))
        (file-name (string-append name "-" version ".tar.gz"))
        (sha256
@@ -181,7 +181,7 @@ (define-public utf8proc
              (substitute* "data/GraphemeBreakTest.txt"
                (("÷") "/")
                (("×") "+")))))))
-    (home-page "https://julialang.org/utf8proc/")
+    (home-page "https://juliastrings.github.io/utf8proc/")
     (synopsis "C library for processing UTF-8 Unicode data")
     (description "utf8proc is a small C library that provides Unicode
 normalization, case-folding, and other operations for data in the UTF-8

From 39ff1d8930df2c53beb174cd9ee2b34a5c7b005d Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Fri, 21 Jun 2019 11:57:39 +0200
Subject: [PATCH 17/39] gnu: utf8proc: Do not use unstable tarball.

* gnu/packages/textutils.scm (utf8proc)[source]: Change to GIT-FETCH.
---
 gnu/packages/textutils.scm | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

diff --git a/gnu/packages/textutils.scm b/gnu/packages/textutils.scm
index 14220b85f1..0b3ea492fb 100644
--- a/gnu/packages/textutils.scm
+++ b/gnu/packages/textutils.scm
@@ -143,13 +143,13 @@ (define-public utf8proc
     (version "2.1.1")
     (source
      (origin
-       (method url-fetch)
-       (uri (string-append
-             "https://github.com/JuliaStrings/utf8proc/archive/v"
-             version ".tar.gz"))
-       (file-name (string-append name "-" version ".tar.gz"))
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/JuliaStrings/utf8proc")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
        (sha256
-        (base32 "1cnpigrazhslw65s4j1a56j7p6d7d61wsxxjf1218i9mkwv2yw17"))))
+        (base32 "1brr8nnpam7y8l9j8fppdpdqvfyfxliw20z41qfip6ygz9pvcsiq"))))
     (build-system gnu-build-system)
     (inputs                 ; test data that is otherwise downloaded with curl
      `(("NormalizationTest.txt"

From 99293380314651858ef2f58bc93429f46b1ce1d8 Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Fri, 21 Jun 2019 11:58:30 +0200
Subject: [PATCH 18/39] gnu: utf8proc: Update to 2.4.0.

* gnu/packages/textutils.scm (utf8proc): Update to 2.4.0.
[inputs]: Rename to ...
[native-inputs]: ... this.  Update Unicode test data and add PERL.
[arguments]: End phase on #t.
---
 gnu/packages/textutils.scm | 20 ++++++++++++--------
 1 file changed, 12 insertions(+), 8 deletions(-)

diff --git a/gnu/packages/textutils.scm b/gnu/packages/textutils.scm
index 0b3ea492fb..d1dc14e6d7 100644
--- a/gnu/packages/textutils.scm
+++ b/gnu/packages/textutils.scm
@@ -140,7 +140,7 @@ (define-public enca
 (define-public utf8proc
   (package
     (name "utf8proc")
-    (version "2.1.1")
+    (version "2.4.0")
     (source
      (origin
        (method git-fetch)
@@ -149,23 +149,26 @@ (define-public utf8proc
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1brr8nnpam7y8l9j8fppdpdqvfyfxliw20z41qfip6ygz9pvcsiq"))))
+        (base32 "1i42hqwc8znqii9brangwkxk5cyc2lk95ip405fg88zr7z2ncr34"))))
     (build-system gnu-build-system)
-    (inputs                 ; test data that is otherwise downloaded with curl
+    (native-inputs           ;test data that is otherwise downloaded with curl
      `(("NormalizationTest.txt"
         ,(origin
            (method url-fetch)
-           (uri (string-append "http://www.unicode.org/Public/9.0.0/ucd/"
+           (uri (string-append "https://www.unicode.org/Public/12.1.0/ucd/"
                                "NormalizationTest.txt"))
            (sha256
-            (base32 "1fxrz0bilsbwl685336aqi88k62i6nqhm62rvy4zhg3bcm4dhj1d"))))
+            (base32 "0hb97k9xv1lr847hwz0719ksqy39s47xw6k01dgs1368jdibvawc"))))
        ("GraphemeBreakTest.txt"
         ,(origin
            (method url-fetch)
-           (uri (string-append "http://www.unicode.org/Public/9.0.0/ucd/"
+           (uri (string-append "https://www.unicode.org/Public/12.1.0/ucd/"
                                "auxiliary/GraphemeBreakTest.txt"))
            (sha256
-            (base32 "0qbhyhmf0778lc2hcwlpizrvmdxwpk959v2q2wb8abv09ba7wvn7"))))))
+            (base32 "0qc90ppmrwfn3y9cdn8jcjrn7qpdf0fhxkwh945yp4rvh37mbgcm"))))
+
+       ;; For tests.
+       ("perl" ,perl)))
     (arguments
      '(#:make-flags (list "CC=gcc"
                           (string-append "prefix=" (assoc-ref %outputs "out")))
@@ -180,7 +183,8 @@ (define-public utf8proc
                        '("NormalizationTest.txt" "GraphemeBreakTest.txt"))
              (substitute* "data/GraphemeBreakTest.txt"
                (("÷") "/")
-               (("×") "+")))))))
+               (("×") "+"))
+             #t)))))
     (home-page "https://juliastrings.github.io/utf8proc/")
     (synopsis "C library for processing UTF-8 Unicode data")
     (description "utf8proc is a small C library that provides Unicode

From 6edbf8de877651495c7b9f6f41e921c501f3c9fb Mon Sep 17 00:00:00 2001
From: Rutger Helling <rhelling@mykolab.com>
Date: Fri, 21 Jun 2019 10:18:19 +0200
Subject: [PATCH 19/39] gnu: vulkan-headers: Update to 1.1.108.

* gnu/packages/vulkan.scm (vulkan-headers): Update to 1.1.108.
* gnu/packages/vulkan.scm (vulkan-loader): Update hash.
[arguments]: Add 'copy-headers1 and 'copy-headers2 phases.
* gnu/packages/vulkan.scm (vulkan-tools): Update hash.
---
 gnu/packages/vulkan.scm | 30 ++++++++++++++++++++++++++----
 1 file changed, 26 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/vulkan.scm b/gnu/packages/vulkan.scm
index 6b151f0a31..86a0d711eb 100644
--- a/gnu/packages/vulkan.scm
+++ b/gnu/packages/vulkan.scm
@@ -159,7 +159,7 @@ (define-public glslang
 (define-public vulkan-headers
   (package
     (name "vulkan-headers")
-    (version "1.1.107")
+    (version "1.1.108")
     (source
      (origin
        (method git-fetch)
@@ -169,7 +169,7 @@ (define-public vulkan-headers
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "0kyf83n6fghqmjj5jbwhy08yq5sl598qnmw3kbavrnw9avqqm0c4"))))
+         "0slj10rfcrd6xpfhm13x3q1ldz2qhk9p64cw0nw0qlmy40k1iy83"))))
     (build-system cmake-build-system)
     (arguments
      `(#:tests? #f))                    ; No tests.
@@ -193,7 +193,7 @@ (define-public vulkan-loader
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "1p64k9x5r7nsrs0cn6d61687xbajqvsm78xk6j85w9wfin5dxs30"))))
+         "08v3sdkr0aii4a9jqhyz8j3x42zm2qswsiy6qsb47wz4bpi90zgy"))))
     (build-system cmake-build-system)
     (arguments
      `(#:tests? #f ;FIXME: 23/39 tests fail.  Try "tests/run_all_tests.sh".
@@ -203,6 +203,28 @@ (define-public vulkan-loader
            (lambda* (#:key inputs #:allow-other-keys)
              ;; Remove lines trying to build in a git commit id.
              (substitute* "CMakeLists.txt" ((".*spirv_tools_commit_id.h.*") ""))
+             #t))
+         ;; Make sure that the files needed for Mesa's Vulkan overlay are availabe.
+         (add-after 'unpack 'copy-headers1
+           (lambda* (#:key outputs #:allow-other-keys)
+             (install-file "tests/layers/vk_layer_data.h"
+                           (string-append (assoc-ref %outputs "out")
+                                          "/include/vulkan"))
+             (install-file "tests/layers/vk_layer_extension_utils.h"
+                           (string-append (assoc-ref %outputs "out")
+                                          "/include/vulkan"))
+             (install-file "loader/vk_loader_platform.h"
+                           (string-append (assoc-ref %outputs "out")
+                                          "/include/vulkan"))
+             #t))
+         (add-after 'build 'copy-headers2
+           (lambda* (#:key outputs #:allow-other-keys)
+             (install-file "vk_layer_dispatch_table.h"
+                           (string-append (assoc-ref %outputs "out")
+                                          "/include/vulkan"))
+             (install-file "vk_dispatch_table_helper.h"
+                           (string-append (assoc-ref %outputs "out")
+                                          "/include/vulkan"))
              #t)))
        #:configure-flags (list
                           "-DBUILD_TESTS=OFF" ; FIXME: Needs 'googletest' submodule.
@@ -244,7 +266,7 @@ (define-public vulkan-tools
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "1mak96jdg3wv043b4jxyv1fm2cz4nnallg0yb90my3yp5q64grrw"))))
+         "1azch34l9b57wxvh2k5vc0qzmhnapli3348wwhs04z6izszyz4kf"))))
     (build-system cmake-build-system)
     (inputs
      `(("glslang" ,glslang)

From 301b2e74f986385664153e6e770e238b351f5cf0 Mon Sep 17 00:00:00 2001
From: Rutger Helling <rhelling@mykolab.com>
Date: Wed, 26 Jun 2019 08:20:27 +0200
Subject: [PATCH 20/39] gnu: mesa: Update to 19.1.1.

* gnu/packages/gl.scm (mesa): Update to 19.1.1.
[native-inputs]: Add glslang, vulkan-headers, vulkan-loader for i686-linux and
x86_64-linux.
[arguments]: Enable "-Dvulkan-overlay-layer" configuration flag for i686-linux
and x86_64-linux.
---
 gnu/packages/gl.scm | 19 +++++++++++++++++--
 1 file changed, 17 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/gl.scm b/gnu/packages/gl.scm
index 96e7fc7165..f0454a6fe3 100644
--- a/gnu/packages/gl.scm
+++ b/gnu/packages/gl.scm
@@ -46,6 +46,7 @@ (define-module (gnu packages gl)
   #:use-module (gnu packages python-xyz)
   #:use-module (gnu packages tls)
   #:use-module (gnu packages video)
+  #:use-module (gnu packages vulkan)
   #:use-module (gnu packages xdisorg)
   #:use-module (gnu packages xml)
   #:use-module (gnu packages xorg)
@@ -223,7 +224,7 @@ (define libva-without-mesa
 (define-public mesa
   (package
     (name "mesa")
-    (version "19.0.4")
+    (version "19.1.1")
     (source
       (origin
         (method url-fetch)
@@ -235,7 +236,7 @@ (define-public mesa
                                   version "/mesa-" version ".tar.xz")))
         (sha256
          (base32
-          "0iyffj3xd7f0vsayirswh6aia37ba26hkihpz273hxwd8hpz7y9r"))
+          "10amy5sdmpjbskr3xazgk0jyli8xpgi0y1nsmjr76hx8nhb4n4bj"))
         (patches
          (search-patches "mesa-skip-disk-cache-test.patch"))))
     (build-system meson-build-system)
@@ -269,6 +270,13 @@ (define-public mesa
       `(("bison" ,bison)
         ("flex" ,flex)
         ("gettext" ,gettext-minimal)
+        ,@(match (%current-system)
+            ((or "x86_64-linux" "i686-linux")
+             `(("glslang" ,glslang)
+               ("vulkan-headers" ,vulkan-headers)
+               ("vulkan-loader" ,vulkan-loader)))
+            (_
+             `()))
         ("pkg-config" ,pkg-config)
         ("python" ,python)
         ("python-mako" ,python-mako)
@@ -305,6 +313,13 @@ (define-public mesa
              (_
               '("-Dvulkan-drivers=auto")))
 
+         ;; Enable the Vulkan overlay layer on i686-linux and x86-64-linux.
+         ,@(match (%current-system)
+             ((or "x86_64-linux" "i686-linux")
+              '("-Dvulkan-overlay-layer=true"))
+             (_
+              '("")))
+
          ;; Also enable the tests.
          "-Dbuild-tests=true"
 

From c24b896365ebf0c783140e53e000305e682d18c5 Mon Sep 17 00:00:00 2001
From: Rutger Helling <rhelling@mykolab.com>
Date: Wed, 26 Jun 2019 09:16:20 +0200
Subject: [PATCH 21/39] gnu: vulkan-headers: Update to 1.1.112.

* gnu/packages/vulkan.scm (vulkan-headers): Update to 1.1.112.
* gnu/packages/vulkan.scm (vulkan-loader): Update hash.
* gnu/packages/vulkan.scm (vulkan-tools): Update hash.
---
 gnu/packages/vulkan.scm | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/vulkan.scm b/gnu/packages/vulkan.scm
index 86a0d711eb..9fb780de77 100644
--- a/gnu/packages/vulkan.scm
+++ b/gnu/packages/vulkan.scm
@@ -159,7 +159,7 @@ (define-public glslang
 (define-public vulkan-headers
   (package
     (name "vulkan-headers")
-    (version "1.1.108")
+    (version "1.1.112")
     (source
      (origin
        (method git-fetch)
@@ -169,7 +169,7 @@ (define-public vulkan-headers
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "0slj10rfcrd6xpfhm13x3q1ldz2qhk9p64cw0nw0qlmy40k1iy83"))))
+         "0iia2wlq38hvxwip6r3k5946ylrlk42fw50mhf0pdjxjh02p8zn5"))))
     (build-system cmake-build-system)
     (arguments
      `(#:tests? #f))                    ; No tests.
@@ -193,7 +193,7 @@ (define-public vulkan-loader
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "08v3sdkr0aii4a9jqhyz8j3x42zm2qswsiy6qsb47wz4bpi90zgy"))))
+         "1819bgmpjlikcc25bkmwwb7mp1rlyrq2v74wybg1g40ix70v0m0d"))))
     (build-system cmake-build-system)
     (arguments
      `(#:tests? #f ;FIXME: 23/39 tests fail.  Try "tests/run_all_tests.sh".
@@ -266,7 +266,7 @@ (define-public vulkan-tools
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "1azch34l9b57wxvh2k5vc0qzmhnapli3348wwhs04z6izszyz4kf"))))
+         "0an9hqvvpfmfld2pkszzwi7ccb9g2ijjqqzlj24dqg9kqnmcr3x4"))))
     (build-system cmake-build-system)
     (inputs
      `(("glslang" ,glslang)

From 93ef8ca662fc3dce4e15977347baa0b9c50dd29e Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Sat, 29 Jun 2019 19:40:08 +0200
Subject: [PATCH 22/39] gnu: mesa: Do not pass an empty string argument to the
 build system.

This is a follow-up to commit 301b2e74f986385664153e6e770e238b351f5cf0.

* gnu/packages/gl.scm (mesa)[arguments]: Return the empty list instead of an
empty string for the non-matching case.
---
 gnu/packages/gl.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/gl.scm b/gnu/packages/gl.scm
index cd82b17d15..9ed043c7ae 100644
--- a/gnu/packages/gl.scm
+++ b/gnu/packages/gl.scm
@@ -318,7 +318,7 @@ (define-public mesa
              ((or "x86_64-linux" "i686-linux")
               '("-Dvulkan-overlay-layer=true"))
              (_
-              '("")))
+              '()))
 
          ;; Also enable the tests.
          "-Dbuild-tests=true"

From c2dad3f98300ac71fcac5c3048673a04c24fe1ec Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Sat, 29 Jun 2019 18:47:37 +0200
Subject: [PATCH 23/39] gnu: nss, nss-certs: Update to 3.44.1.

* gnu/packages/certs.scm (nss-certs): Update to 3.44.1.
* gnu/packages/nss.scm (nss): Likewise.
---
 gnu/packages/certs.scm | 4 ++--
 gnu/packages/nss.scm   | 4 ++--
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/certs.scm b/gnu/packages/certs.scm
index ee8815d522..c41870332c 100644
--- a/gnu/packages/certs.scm
+++ b/gnu/packages/certs.scm
@@ -76,7 +76,7 @@ (define certdata2pem
 (define-public nss-certs
   (package
     (name "nss-certs")
-    (version "3.44")
+    (version "3.44.1")
     (source (origin
               (method url-fetch)
               (uri (let ((version-with-underscores
@@ -87,7 +87,7 @@ (define-public nss-certs
                       "nss-" version ".tar.gz")))
               (sha256
                (base32
-                "1zvabgxlyvz3fnv4w89y4a5qkscjmm88naf929dgvvgfnrchwqm5"))))
+                "1y0jvva4s3j7cjz22kqw2lsml0an1295bgpc2raf7kc9r60cpr7w"))))
     (build-system gnu-build-system)
     (outputs '("out"))
     (native-inputs
diff --git a/gnu/packages/nss.scm b/gnu/packages/nss.scm
index 83f4431c2b..40a8002954 100644
--- a/gnu/packages/nss.scm
+++ b/gnu/packages/nss.scm
@@ -70,7 +70,7 @@ (define-public nspr
 (define-public nss
   (package
     (name "nss")
-    (version "3.44")
+    (version "3.44.1")
     (source (origin
               (method url-fetch)
               (uri (let ((version-with-underscores
@@ -81,7 +81,7 @@ (define-public nss
                       "nss-" version ".tar.gz")))
               (sha256
                (base32
-                "1zvabgxlyvz3fnv4w89y4a5qkscjmm88naf929dgvvgfnrchwqm5"))
+                "1y0jvva4s3j7cjz22kqw2lsml0an1295bgpc2raf7kc9r60cpr7w"))
               ;; Create nss.pc and nss-config.
               (patches (search-patches "nss-pkgconfig.patch"
                                        "nss-increase-test-timeout.patch"))))

From 8cf7afe69d08918267c38f19ba06a4008e33489d Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Sat, 29 Jun 2019 18:48:06 +0200
Subject: [PATCH 24/39] gnu: libinput: Update to 1.13.4.

* gnu/packages/freedesktop.scm (libinput): Update to 1.13.4.
---
 gnu/packages/freedesktop.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/freedesktop.scm b/gnu/packages/freedesktop.scm
index 4b37ffdf3c..d77d6c58c4 100644
--- a/gnu/packages/freedesktop.scm
+++ b/gnu/packages/freedesktop.scm
@@ -152,14 +152,14 @@ (define-public xdg-utils
 (define-public libinput
   (package
     (name "libinput")
-    (version "1.13.2")
+    (version "1.13.4")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://freedesktop.org/software/libinput/"
                                   "libinput-" version ".tar.xz"))
               (sha256
                (base32
-                "0vbapc90m49n0z8w8w4v0qf1iiwaixw9h79jfmps9pj8hdls17qx"))))
+                "07a0w7rak7rvnh6g4j0akwjxwinxfszc1xi9mrx12fv82k3mgsyk"))))
     (build-system meson-build-system)
     (arguments
      `(#:configure-flags '("-Ddocumentation=false")))

From 5e26ac3f6a468b5a3e88f512b4ac6a92ad650935 Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Sat, 29 Jun 2019 18:48:28 +0200
Subject: [PATCH 25/39] gnu: gtk+: Update to 3.24.9.

* gnu/packages/gtk.scm (gtk+): Update to 3.24.9.
---
 gnu/packages/gtk.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/gtk.scm b/gnu/packages/gtk.scm
index 2776bd31a3..e63e84a7c3 100644
--- a/gnu/packages/gtk.scm
+++ b/gnu/packages/gtk.scm
@@ -732,7 +732,7 @@ (define-public gtk+
    (name "gtk+")
    ;; NOTE: When updating the version of 'gtk+', the hash of 'mate-themes' in
    ;;       mate.scm will also need to be updated.
-   (version "3.24.8")
+   (version "3.24.9")
    (source (origin
             (method url-fetch)
             (uri (string-append "mirror://gnome/sources/" name "/"
@@ -740,7 +740,7 @@ (define-public gtk+
                                 name "-" version ".tar.xz"))
             (sha256
              (base32
-              "16f71bbkhwhndcsrpyhjia3b77cb5ksf5c45lyfgws4pkgg64sb6"))
+              "0dg6jf2763sp740ls6b5y86b5b9zhz3zj0sbmar2xpws1lkv0zjp"))
             (patches (search-patches "gtk3-respect-GUIX_GTK3_PATH.patch"
                                      "gtk3-respect-GUIX_GTK3_IM_MODULE_FILE.patch"))))
    (outputs '("out" "bin" "doc"))

From 966e4beadcf5dcc7537ccdbe42505c9129c5dd08 Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Sat, 29 Jun 2019 18:48:50 +0200
Subject: [PATCH 26/39] gnu: perl-net-ssleay: Update to 1.88.

* gnu/packages/tls.scm (perl-net-ssleay): Update to 1.88.
---
 gnu/packages/tls.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/tls.scm b/gnu/packages/tls.scm
index 8e20101e51..bd1606c164 100644
--- a/gnu/packages/tls.scm
+++ b/gnu/packages/tls.scm
@@ -643,14 +643,14 @@ (define-public letsencrypt
 (define-public perl-net-ssleay
   (package
     (name "perl-net-ssleay")
-    (version "1.85")
+    (version "1.88")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://cpan/authors/id/M/MI/MIKEM/"
                                   "Net-SSLeay-" version ".tar.gz"))
               (sha256
                (base32
-                "1j5h4ycm8538397l204d2d5fkm9595aj174pj7bkpbhwzfwqi0cx"))))
+                "1pfgh4h3szcpvqlcimc60pjbk9zwls99x5863sva0wc47i4dl010"))))
     (build-system perl-build-system)
     (inputs `(("openssl" ,openssl)))
     (arguments

From c50f15d67f5e6e15335150146903473b1e36c91e Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Sun, 30 Jun 2019 12:45:52 +0200
Subject: [PATCH 27/39] gnu: perl-net-ssleay: Update source URI.

This is a follow-up to commit 966e4beadcf5dcc7537ccdbe42505c9129c5dd08.

* gnu/packages/tls.scm (perl-net-ssleay)[source](uri): Update to current.
---
 gnu/packages/tls.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/tls.scm b/gnu/packages/tls.scm
index bd1606c164..53f5ccb26f 100644
--- a/gnu/packages/tls.scm
+++ b/gnu/packages/tls.scm
@@ -646,7 +646,7 @@ (define-public perl-net-ssleay
     (version "1.88")
     (source (origin
               (method url-fetch)
-              (uri (string-append "mirror://cpan/authors/id/M/MI/MIKEM/"
+              (uri (string-append "mirror://cpan/authors/id/C/CH/CHRISN/"
                                   "Net-SSLeay-" version ".tar.gz"))
               (sha256
                (base32

From 730c1cc04ea1e458c4690e28db415e0c4ea136ff Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Sun, 30 Jun 2019 13:41:21 +0200
Subject: [PATCH 28/39] gnu: ImageMagick: Update to 6.9.10-50.

* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-50.
---
 gnu/packages/imagemagick.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/imagemagick.scm b/gnu/packages/imagemagick.scm
index dba193d8e5..769b0bda64 100644
--- a/gnu/packages/imagemagick.scm
+++ b/gnu/packages/imagemagick.scm
@@ -48,14 +48,14 @@ (define-public imagemagick
     ;; The 7 release series has an incompatible API, while the 6 series is still
     ;; maintained. Don't update to 7 until we've made sure that the ImageMagick
     ;; users are ready for the 7-series API.
-    (version "6.9.10-49")
+    (version "6.9.10-50")
     (source (origin
              (method url-fetch)
              (uri (string-append "mirror://imagemagick/ImageMagick-"
                                  version ".tar.xz"))
              (sha256
               (base32
-               "1w4vsppyn1h58x3z4hgly5qxp16q66l18y9rwavrravw0kiq64fs"))))
+               "1p8mqfz500bc6hapm64xr5qjrgmkfw7cq9m73xfzaxlriih8rm56"))))
     (build-system gnu-build-system)
     (arguments
      `(#:configure-flags '("--with-frozenpaths" "--without-gcc-arch")

From d1b93e91a47e4e6caa8313069a51ab9955ccf31d Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Sun, 30 Jun 2019 13:41:53 +0200
Subject: [PATCH 29/39] gnu: python-cython: Update to 0.29.11.

* gnu/packages/python-xyz.scm (python-cython): Update to 0.29.11.
---
 gnu/packages/python-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 4ba40e95b0..8398dede79 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -3181,14 +3181,14 @@ (define-public python2-scikit-image
 (define-public python-cython
   (package
     (name "python-cython")
-    (version "0.29.7")
+    (version "0.29.11")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "Cython" version))
        (sha256
         (base32
-         "1s61hq2ikawxp6qvmkbfvvaxy9rqj67cddzwgcfc3dwi44b83l2m"))))
+         "1866m01ggl2h3rky4hac3m5p048gg4a0jb09ljkknryiqln54fkn"))))
     (build-system python-build-system)
     ;; we need the full python package and not just the python-wrapper
     ;; because we need libpython3.3m.so

From 27b3568b612721605240d531f0f45934bddffe9b Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Tue, 2 Jul 2019 01:57:13 +0200
Subject: [PATCH 30/39] gnu: tzdata: Update source URI.

* gnu/packages/base.scm (tzdata, tzdata-for-tests)[source, native-inputs]:
Update redirected URIs.
---
 gnu/packages/base.scm | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/base.scm b/gnu/packages/base.scm
index 15f35009a9..59b50440aa 100644
--- a/gnu/packages/base.scm
+++ b/gnu/packages/base.scm
@@ -1219,7 +1219,7 @@ (define-public tzdata
     (source (origin
              (method url-fetch)
              (uri (string-append
-                   "https://www.iana.org/time-zones/repository/releases/tzdata"
+                   "https://data.iana.org/time-zones/releases/tzdata"
                    version ".tar.gz"))
              (sha256
               (base32
@@ -1269,7 +1269,7 @@ (define-public tzdata
     (inputs `(("tzcode" ,(origin
                           (method url-fetch)
                           (uri (string-append
-                                "http://www.iana.org/time-zones/repository/releases/tzcode"
+                                "https://data.iana.org/time-zones/releases/tzcode"
                                 version ".tar.gz"))
                           (sha256
                            (base32
@@ -1296,7 +1296,7 @@ (define-public tzdata-for-tests
      (source (origin
               (method url-fetch)
               (uri (string-append
-                    "https://www.iana.org/time-zones/repository/releases/tzdata"
+                    "https://data.iana.org/time-zones/releases/tzdata"
                     version ".tar.gz"))
               (sha256
                (base32
@@ -1305,7 +1305,7 @@ (define-public tzdata-for-tests
        `(("tzcode" ,(origin
                      (method url-fetch)
                      (uri (string-append
-                           "http://www.iana.org/time-zones/repository/releases/tzcode"
+                           "http://data.iana.org/time-zones/releases/tzcode"
                            version ".tar.gz"))
                      (sha256
                       (base32

From 4c1cfe0faf78e95decdb908528a896ef8e31c217 Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Tue, 2 Jul 2019 14:09:30 +0200
Subject: [PATCH 31/39] gnu: perl-module-build: Update to 0.4229.

* gnu/packages/perl.scm (perl-module-build): Update to 0.4229.
---
 gnu/packages/perl.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/perl.scm b/gnu/packages/perl.scm
index d0df091494..9ab7c37a24 100644
--- a/gnu/packages/perl.scm
+++ b/gnu/packages/perl.scm
@@ -9588,7 +9588,7 @@ (define-public perl-cpan-meta-yaml
 (define-public perl-module-build
   (package
     (name "perl-module-build")
-    (version "0.4220")
+    (version "0.4229")
     (source
      (origin
        (method url-fetch)
@@ -9596,7 +9596,7 @@ (define-public perl-module-build
                            "Module-Build-" version ".tar.gz"))
        (sha256
         (base32
-         "18mm6k7d7cmj9l6na1c50vbc8hc1pwsz38yxi9x6ydlrwz3hf4pv"))))
+         "064c03wxia7jz0i578awj4srykj0nnigm4p5r0dv0559rnk93r0z"))))
     (build-system perl-build-system)
     (propagated-inputs
      `(("perl-cpan-meta" ,perl-cpan-meta)))

From c6c0940ea33f034ea0efc5525feaeeebdc7b521d Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Tue, 2 Jul 2019 14:36:00 +0200
Subject: [PATCH 32/39] gnu: python-pycparser: Update to 2.19.

* gnu/packages/python-xyz.scm (python-pycparser): Update to 2.19.
[arguments]: End phases on #t.
---
 gnu/packages/python-xyz.scm | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 8398dede79..01b0f15cea 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -4413,14 +4413,14 @@ (define-public python2-pillow
 (define-public python-pycparser
   (package
     (name "python-pycparser")
-    (version "2.18")
+    (version "2.19")
     (source
      (origin
       (method url-fetch)
       (uri (pypi-uri "pycparser" version))
       (sha256
        (base32
-        "09mjyw82ibqzl449g7swy8bfxnfpmas0815d2rkdjlcqw81wma4r"))))
+        "1cr5dcj9628lkz1qlwq3fv97c25363qppkmcayqvd05dpy573259"))))
     (outputs '("out" "doc"))
     (build-system python-build-system)
     (native-inputs
@@ -4443,7 +4443,8 @@ (define-public python-pycparser
                            (copy-file (string-append "." file)
                                       (string-append doc file)))
                          '("/README.rst" "/CHANGES" "/LICENSE"))
-               (copy-recursively "examples" examples)))))))
+               (copy-recursively "examples" examples)
+               #t))))))
     (home-page "https://github.com/eliben/pycparser")
     (synopsis "C parser in Python")
     (description

From 6dc7a1934269b537e19876165a18caf2a18aad2a Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Tue, 2 Jul 2019 14:48:04 +0200
Subject: [PATCH 33/39] gnu: python-mako: Update to 1.0.13.

* gnu/packages/python-xyz.scm (python-mako): Update to 1.0.13.
---
 gnu/packages/python-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 01b0f15cea..26b53b62ca 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -8672,14 +8672,14 @@ (define-public python2-xdo
 (define-public python-mako
   (package
     (name "python-mako")
-    (version "1.0.12")
+    (version "1.0.13")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "Mako" version))
        (sha256
         (base32
-         "0qj16ai937wrbpv1a9g395gybb9s06rmdj3arbp8fpl37bg6byhc"))))
+         "0h95n0g0k1jwxiqarr09navpfajarvbmpm8mhmw66c25qc675vlm"))))
     (build-system python-build-system)
     (propagated-inputs
      `(("python-markupsafe" ,python-markupsafe)))

From af65e4c289041bbf8d03d9655cfd8f62621a51ed Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Tue, 2 Jul 2019 14:49:47 +0200
Subject: [PATCH 34/39] gnu: ImageMagick: Update to 6.9.10-51.

* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-51.
---
 gnu/packages/imagemagick.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/imagemagick.scm b/gnu/packages/imagemagick.scm
index 769b0bda64..3cc9396d57 100644
--- a/gnu/packages/imagemagick.scm
+++ b/gnu/packages/imagemagick.scm
@@ -48,14 +48,14 @@ (define-public imagemagick
     ;; The 7 release series has an incompatible API, while the 6 series is still
     ;; maintained. Don't update to 7 until we've made sure that the ImageMagick
     ;; users are ready for the 7-series API.
-    (version "6.9.10-50")
+    (version "6.9.10-51")
     (source (origin
              (method url-fetch)
              (uri (string-append "mirror://imagemagick/ImageMagick-"
                                  version ".tar.xz"))
              (sha256
               (base32
-               "1p8mqfz500bc6hapm64xr5qjrgmkfw7cq9m73xfzaxlriih8rm56"))))
+               "03c5r14ycp7mmlk6pryfcnpvjjnghk3z7dbjd1b7m1bgzmw21jhj"))))
     (build-system gnu-build-system)
     (arguments
      `(#:configure-flags '("--with-frozenpaths" "--without-gcc-arch")

From 0323db5aef236647ac3318bdd028edac6b92da68 Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Tue, 2 Jul 2019 17:11:39 +0200
Subject: [PATCH 35/39] gnu: tzdata: Update to 2019b.

* gnu/packages/base.scm (tzdata): Update to 2019b.
---
 gnu/packages/base.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/base.scm b/gnu/packages/base.scm
index 59b50440aa..90dd69cfa3 100644
--- a/gnu/packages/base.scm
+++ b/gnu/packages/base.scm
@@ -1215,7 +1215,7 @@ (define-public glibc/hurd-headers
 (define-public tzdata
   (package
     (name "tzdata")
-    (version "2019a")
+    (version "2019b")
     (source (origin
              (method url-fetch)
              (uri (string-append
@@ -1223,7 +1223,7 @@ (define-public tzdata
                    version ".tar.gz"))
              (sha256
               (base32
-               "0wlpqm4asvi0waaz24xj20iq40gqfypmb4nldjhkfgm09bgnsdlh"))))
+               "0r0clnlslwm15m1c61dinf1fi9ffgl6aipng7i7yryfwj0n0kn85"))))
     (build-system gnu-build-system)
     (arguments
      '(#:tests? #f
@@ -1273,7 +1273,7 @@ (define-public tzdata
                                 version ".tar.gz"))
                           (sha256
                            (base32
-                            "1x9z8fpgnhzlsnps0hamb54ymaskjab7ys9m4i4gpk9hpiig2fc7"))))))
+                            "0vbmswvv3li25s31shyllq5v24449lxnrki9hr043nipjd09sirf"))))))
     (home-page "https://www.iana.org/time-zones")
     (synopsis "Database of current and historical time zones")
     (description "The Time Zone Database (often called tz or zoneinfo)

From e307f52e01f46f99d7e3e729b9cfac446c783fc4 Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Tue, 2 Jul 2019 17:14:34 +0200
Subject: [PATCH 36/39] gnu: postgresql@10: Update to 10.9.

* gnu/packages/databases.scm (postgresql): Update to 10.9.
---
 gnu/packages/databases.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index 561a3b3b12..01ce5f1ae7 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -804,14 +804,14 @@ (define-public mariadb
 (define-public postgresql
   (package
     (name "postgresql")
-    (version "10.8")
+    (version "10.9")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://ftp.postgresql.org/pub/source/v"
                                   version "/postgresql-" version ".tar.bz2"))
               (sha256
                (base32
-                "0pfdmy4w95b49w9rkn8dwvzmi2brpqfvbxd04y0k0s0xvymc565i"))
+                "0m0gbf7nwgag6a1z5f9xszwzgf2xhx0ncakyxwxlzs87n1zk32wm"))
               (patches (search-patches "postgresql-disable-resolve_symlinks.patch"))))
     (build-system gnu-build-system)
     (arguments

From b8d41cfc875b1a6c438ac138fdce9caa579b8486 Mon Sep 17 00:00:00 2001
From: Robert Vollmert <rob@vllmrt.net>
Date: Sun, 30 Jun 2019 22:54:48 +0200
Subject: [PATCH 37/39] gnu: ghc-primitive: Update to 0.6.4.0.

* gnu/packages/haskell.scm (ghc-primitive): Update to 0.6.4.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
---
 gnu/packages/haskell.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index cfbd3bfb76..52f688a283 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -2685,7 +2685,7 @@ (define-public ghc-random
 (define-public ghc-primitive
   (package
     (name "ghc-primitive")
-    (version "0.6.3.0")
+    (version "0.6.4.0")
     (outputs '("out" "doc"))
     (source
      (origin
@@ -2696,7 +2696,7 @@ (define-public ghc-primitive
              ".tar.gz"))
        (sha256
         (base32
-         "0mcmbnj08wd6zfwn7xk6zf5hy5zwbla5v78pw0dpymqg9s0gzpnd"))))
+         "0r0cda7acvplgwaxy69kviv4jp7kkfi038by68gj4yfx4iwszgjc"))))
     (build-system haskell-build-system)
     (home-page
      "https://github.com/haskell/primitive")

From d69e90e2afc30e9cb8cd9ec0ef9d71f45fa52160 Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Tue, 2 Jul 2019 21:05:21 +0200
Subject: [PATCH 38/39] gnu: libdrm: Update to 2.4.99.

* gnu/packages/xdisorg.scm (libdrm): Update to 2.4.99.
---
 gnu/packages/xdisorg.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/xdisorg.scm b/gnu/packages/xdisorg.scm
index 8d547969b3..c99e32c291 100644
--- a/gnu/packages/xdisorg.scm
+++ b/gnu/packages/xdisorg.scm
@@ -379,7 +379,7 @@ (define-public pixman
 (define-public libdrm
   (package
     (name "libdrm")
-    (version "2.4.98")
+    (version "2.4.99")
     (source
       (origin
         (method url-fetch)
@@ -389,7 +389,7 @@ (define-public libdrm
                ".tar.bz2"))
         (sha256
          (base32
-          "150qdzsm2nx6dfacc75rx53anzsc6m31nhxidf5xxax3mk6fvq4b"))
+          "0pnsw4bmajzdbz8pk4wswdmw93shhympf2q9alhbnpfjgsf57gsd"))
         (patches (search-patches "libdrm-symbol-check.patch"))))
     (build-system meson-build-system)
     (arguments

From c6daa9cfb26552d36f451521b6380a07973a3b17 Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Wed, 3 Jul 2019 16:32:43 +0200
Subject: [PATCH 39/39] gnu: xkeyboard-config: Update to 2.27.

* gnu/packages/xorg.scm (xkeyboard-config): Update to 2.27.
---
 gnu/packages/xorg.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/xorg.scm b/gnu/packages/xorg.scm
index 6e503e7b43..29b9010a99 100644
--- a/gnu/packages/xorg.scm
+++ b/gnu/packages/xorg.scm
@@ -3829,7 +3829,7 @@ (define-public xkbutils
 (define-public xkeyboard-config
   (package
     (name "xkeyboard-config")
-    (version "2.26")
+    (version "2.27")
     (source
       (origin
         (method url-fetch)
@@ -3839,7 +3839,7 @@ (define-public xkeyboard-config
               ".tar.bz2"))
         (sha256
           (base32
-            "13h3381pfp4pv32189zkfsj2x0alr91xj6dqii76rl0c8v3ihdrr"))))
+            "07wh443lhwv1j0q6xnxnji7f7ahh7xphxj90fv02cdd6zv4aw3b9"))))
     (build-system gnu-build-system)
     (inputs
       `(("gettext" ,gettext-minimal)