gnu: Add r-timeseriesexperiment.

* gnu/packages/bioconductor.scm (r-timeseriesexperiment): New variable.
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Ricardo Wurmus 2019-09-15 20:42:41 +02:00
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@ -5505,3 +5505,42 @@ (define-public r-wavcluster
be applied to the analysis of other NGS data obtained from experimental be applied to the analysis of other NGS data obtained from experimental
procedures that induce nucleotide substitutions (e.g. BisSeq).") procedures that induce nucleotide substitutions (e.g. BisSeq).")
(license license:gpl2))) (license license:gpl2)))
(define-public r-timeseriesexperiment
(package
(name "r-timeseriesexperiment")
(version "1.2.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "TimeSeriesExperiment" version))
(sha256
(base32
"1j11g7a2p0yk38fx6wd6152l1xynghj01pfxihalw601jwf1bl0y"))))
(properties
`((upstream-name . "TimeSeriesExperiment")))
(build-system r-build-system)
(propagated-inputs
`(("r-deseq2" ,r-deseq2)
("r-dplyr" ,r-dplyr)
("r-dynamictreecut" ,r-dynamictreecut)
("r-edger" ,r-edger)
("r-ggplot2" ,r-ggplot2)
("r-hmisc" ,r-hmisc)
("r-limma" ,r-limma)
("r-magrittr" ,r-magrittr)
("r-proxy" ,r-proxy)
("r-s4vectors" ,r-s4vectors)
("r-summarizedexperiment" ,r-summarizedexperiment)
("r-tibble" ,r-tibble)
("r-tidyr" ,r-tidyr)
("r-vegan" ,r-vegan)
("r-viridis" ,r-viridis)))
(home-page "https://github.com/nlhuong/TimeSeriesExperiment/")
(synopsis "Analysis for short time-series data")
(description
"This package is a visualization and analysis toolbox for short time
course data which includes dimensionality reduction, clustering, two-sample
differential expression testing and gene ranking techniques. The package also
provides methods for retrieving enriched pathways.")
(license license:lgpl3+)))