gnu: Add r-affixcan.

* gnu/packages/bioconductor.scm (r-affixcan): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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Mădălin Ionel Patrașcu 2022-04-26 17:24:55 +02:00 committed by Ricardo Wurmus
parent 43dc50a5c7
commit 851770312f
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@ -1741,6 +1741,34 @@ (define-public r-adsplit
the supporting gene set is determined.")
(license license:gpl2+)))
(define-public r-affixcan
(package
(name "r-affixcan")
(version "1.12.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "AffiXcan" version))
(sha256
(base32
"06yn87briv2141jqad934gg5rcd90w5nghrgmbhqnmwafn72gj9d"))))
(properties `((upstream-name . "AffiXcan")))
(build-system r-build-system)
(propagated-inputs
(list r-biocparallel
r-crayon
r-multiassayexperiment
r-summarizedexperiment))
(native-inputs (list r-knitr))
(home-page "https://bioconductor.org/packages/AffiXcan")
(synopsis "Functional approach to impute genetically regulated expression")
(description
"The @code{AffiXcan} package imputes a @dfn{genetically regulated
expression} (GReX) for a set of genes in a sample of individuals, using a
method based on the @dfn{total binding affinity} (TBA). Statistical models to
impute GReX can be trained with a training dataset where the real total
expression values are known.")
(license license:gpl3)))
(define-public r-aneufinder
(package
(name "r-aneufinder")