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gnu: bcftools: Update to 1.14.

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* gnu/packages/bioinformatics.scm (bcftools): Update to 1.14.
(bcftools-1.12): New variable.
(bcftools-1.10): Use package/inherit and delete trailing #t.
[name]: Delete field.
This commit is contained in:
Maxim Cournoyer 2021-12-22 22:06:11 -05:00
parent 23fdb5a69c
commit 801d0ed622
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GPG key ID: 1260E46482E63562
1 changed files with 24 additions and 13 deletions
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37
gnu/packages/bioinformatics.scm
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@ -373,7 +373,7 @@ (define-public bamutils
(define-public bcftools
(package
(name "bcftools")
(version "1.12")
(version "1.14")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/samtools/bcftools/"
@ -381,12 +381,11 @@ (define-public bcftools
version "/bcftools-" version ".tar.bz2"))
(sha256
(base32
"1x94l1hy2pi3lbz0sxlbw0g6q5z5apcrhrlcwda94ns9n4r6a3ks"))
"1jqrma16fx8kpvb3c0462dg0asvmiv5yi8myqmc5ddgwi6p8ivxp"))
(modules '((guix build utils)))
(snippet '(begin
;; Delete bundled htslib.
(delete-file-recursively "htslib-1.12")
#t))))
(delete-file-recursively "htslib-1.14")))))
(build-system gnu-build-system)
(arguments
`(#:configure-flags
@ -397,8 +396,7 @@ (define-public bcftools
(add-before 'check 'patch-tests
(lambda _
(substitute* "test/test.pl"
(("/bin/bash") (which "bash")))
#t)))))
(("/bin/bash") (which "bash"))))))))
(native-inputs
(list htslib perl))
(inputs
@ -412,9 +410,25 @@ (define-public bcftools
;; The sources are dual MIT/GPL, but becomes GPL-only when USE_GPL=1.
(license (list license:gpl3+ license:expat))))
(define-public bcftools-1.12
(package/inherit bcftools
(version "1.12")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/samtools/bcftools/"
"releases/download/"
version "/bcftools-" version ".tar.bz2"))
(sha256
(base32
"1x94l1hy2pi3lbz0sxlbw0g6q5z5apcrhrlcwda94ns9n4r6a3ks"))
(modules '((guix build utils)))
(snippet '(begin
;; Delete bundled htslib.
(delete-file-recursively "htslib-1.12")))))
(native-inputs (list htslib-1.12 perl))))
(define-public bcftools-1.10
(package (inherit bcftools)
(name "bcftools")
(package/inherit bcftools
(version "1.10")
(source (origin
(method url-fetch)
@ -427,11 +441,8 @@ (define-public bcftools-1.10
(modules '((guix build utils)))
(snippet '(begin
;; Delete bundled htslib.
(delete-file-recursively "htslib-1.10")
#t))))
(build-system gnu-build-system)
(native-inputs
(list htslib-1.10 perl))))
(delete-file-recursively "htslib-1.10")))))
(native-inputs (list htslib-1.10 perl))))
(define-public bedops
(package