gnu: python-intervaltree: Update to 3.0.2.
* gnu/packages/bioinformatics.scm (python-intervaltree): Update to 3.0.2. [arguments]: Don't skip the tests, work around the problematic sanity-check instead.
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@ -16,6 +16,7 @@
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;;; Copyright © 2019 Brian Leung <bkleung89@gmail.com>
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;;; Copyright © 2019 Brian Leung <bkleung89@gmail.com>
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;;; Copyright © 2019 Brett Gilio <brettg@gnu.org>
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;;; Copyright © 2019 Brett Gilio <brettg@gnu.org>
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;;; Copyright © 2020 Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
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;;; Copyright © 2020 Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
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;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net>
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;;;
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;;;
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;;; This file is part of GNU Guix.
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;;; This file is part of GNU Guix.
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;;;
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;;;
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@ -13552,17 +13553,27 @@ (define-public intervaltree
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(define-public python-intervaltree
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(define-public python-intervaltree
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(package
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(package
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(name "python-intervaltree")
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(name "python-intervaltree")
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(version "2.1.0")
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(version "3.0.2")
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(source
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(source
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(origin
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(origin
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(method url-fetch)
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(method url-fetch)
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(uri (pypi-uri "intervaltree" version))
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(uri (pypi-uri "intervaltree" version))
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(sha256
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(sha256
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(base32
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(base32
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"02w191m9zxkcjqr1kv2slxvhymwhj3jnsyy3a28b837pi15q19dc"))))
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"0wz234g6irlm4hivs2qzmnywk0ss06ckagwh15nflkyb3p462kyb"))))
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(build-system python-build-system)
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(build-system python-build-system)
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;; FIXME: error when collecting tests
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(arguments
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(arguments '(#:tests? #f))
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`(#:phases
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(modify-phases %standard-phases
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;; pytest seems to have a check to make sure the user is testing
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;; their checked-out code and not an installed, potentially
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;; out-of-date copy. This is harmless here, since we just installed
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;; the package, so we disable the check to avoid skipping tests
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;; entirely.
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(add-before 'check 'import-mismatch-error-workaround
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(lambda _
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(setenv "PY_IGNORE_IMPORTMISMATCH" "1")
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#t)))))
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(propagated-inputs
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(propagated-inputs
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`(("python-sortedcontainers" ,python-sortedcontainers)))
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`(("python-sortedcontainers" ,python-sortedcontainers)))
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(native-inputs
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(native-inputs
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