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gnu: r-summarizedexperiment: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Move variable from here...
* gnu/packages/bioconductor.scm (r-summarizedexperiment): ...to here.
This commit is contained in:
Ricardo Wurmus 2021-05-04 10:11:34 +02:00
parent b602ec9fba
commit 7694acebd1
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2 changed files with 34 additions and 34 deletions
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34
gnu/packages/bioconductor.scm
View file

@ -2395,6 +2395,40 @@ (define-public r-shortread
ungapped alignment formats.")
(license license:artistic2.0)))
(define-public r-summarizedexperiment
(package
(name "r-summarizedexperiment")
(version "1.20.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "SummarizedExperiment" version))
(sha256
(base32
"04x6d4mcsnvz6glkmf6k2cv3fs8zk03i9rvv0ahpl793n8l411ps"))))
(properties
`((upstream-name . "SummarizedExperiment")))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-delayedarray" ,r-delayedarray)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-matrix" ,r-matrix)
("r-matrixgenerics" ,r-matrixgenerics)
("r-s4vectors" ,r-s4vectors)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/SummarizedExperiment")
(synopsis "Container for representing genomic ranges by sample")
(description
"The SummarizedExperiment container contains one or more assays, each
represented by a matrix-like object of numeric or other mode. The rows
typically represent genomic ranges of interest and the columns represent
samples.")
(license license:artistic2.0)))
(define-public r-systempiper
(package
(name "r-systempiper")

34
gnu/packages/bioinformatics.scm
View file

@ -7838,40 +7838,6 @@ (define-public bio-vcf
(home-page "https://github.com/vcflib/bio-vcf")
(license license:expat)))
(define-public r-summarizedexperiment
(package
(name "r-summarizedexperiment")
(version "1.20.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "SummarizedExperiment" version))
(sha256
(base32
"04x6d4mcsnvz6glkmf6k2cv3fs8zk03i9rvv0ahpl793n8l411ps"))))
(properties
`((upstream-name . "SummarizedExperiment")))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-delayedarray" ,r-delayedarray)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-matrix" ,r-matrix)
("r-matrixgenerics" ,r-matrixgenerics)
("r-s4vectors" ,r-s4vectors)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/SummarizedExperiment")
(synopsis "Container for representing genomic ranges by sample")
(description
"The SummarizedExperiment container contains one or more assays, each
represented by a matrix-like object of numeric or other mode. The rows
typically represent genomic ranges of interest and the columns represent
samples.")
(license license:artistic2.0)))
(define-public r-genomicalignments
(package
(name "r-genomicalignments")