gnu: Add r-isoformswitchanalyzer.
* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): New variable.
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@ -1786,6 +1786,59 @@ (define-public r-iranges
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possible.")
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(license license:artistic2.0)))
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(define-public r-isoformswitchanalyzer
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(package
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(name "r-isoformswitchanalyzer")
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(version "1.16.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "IsoformSwitchAnalyzeR" version))
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(sha256
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(base32 "14bqf39gw5ab5r9sr3afkig1jbzdvds1bmcvc6bpb45kschx7fwf"))))
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(properties `((upstream-name . "IsoformSwitchAnalyzeR")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biobase" ,r-biobase)
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("r-biocgenerics" ,r-biocgenerics)
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("r-biostrings" ,r-biostrings)
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("r-bsgenome" ,r-bsgenome)
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("r-dbi" ,r-dbi)
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("r-dexseq" ,r-dexseq)
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("r-dplyr" ,r-dplyr)
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("r-drimseq" ,r-drimseq)
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("r-edger" ,r-edger)
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("r-futile-logger" ,r-futile-logger)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicranges" ,r-genomicranges)
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("r-ggplot2" ,r-ggplot2)
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("r-gridextra" ,r-gridextra)
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("r-iranges" ,r-iranges)
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("r-limma" ,r-limma)
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("r-magrittr" ,r-magrittr)
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("r-plyr" ,r-plyr)
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("r-rcolorbrewer" ,r-rcolorbrewer)
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("r-rcurl" ,r-rcurl)
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("r-readr" ,r-readr)
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("r-reshape2" ,r-reshape2)
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("r-rtracklayer" ,r-rtracklayer)
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("r-stringr" ,r-stringr)
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("r-tibble" ,r-tibble)
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("r-tximeta" ,r-tximeta)
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("r-tximport" ,r-tximport)
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("r-venndiagram" ,r-venndiagram)
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("r-xvector" ,r-xvector)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://bioconductor.org/packages/IsoformSwitchAnalyzeR/")
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(synopsis "Analyze alternative splicing in RNA-seq data")
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(description
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"This is a package for the analysis of alternative splicing and isoform
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switches with predicted functional consequences (e.g. gain/loss of protein
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domains etc.) from quantification of all types of RNASeq by tools such as
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Kallisto, Salmon, StringTie, Cufflinks/Cuffdiff etc.")
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(license license:gpl2+)))
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;; This is a CRAN package, but it depends on r-biobase and r-limma from Bioconductor.
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(define-public r-absfiltergsea
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(package
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