gnu: Add r-activedriverwgs.
* gnu/packages/bioconductor.scm (r-activedriverwgs): New variable.
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@ -6059,3 +6059,37 @@ (define-public r-unifiedwmwqpcr
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data. This modified test allows for testing differential expression in qPCR
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data. This modified test allows for testing differential expression in qPCR
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data.")
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data.")
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(license license:gpl2+)))
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(license license:gpl2+)))
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;; This is a CRAN package, but it depends on Bioconductor packages, so we put
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;; it here.
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(define-public r-activedriverwgs
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(package
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(name "r-activedriverwgs")
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(version "1.0.1")
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(source
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(origin
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(method url-fetch)
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(uri (cran-uri "ActiveDriverWGS" version))
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(sha256
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(base32
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"08l9dj8d3cd74z1dqn8n4yqykwvqjxsfa067wnxyh7xnfvvnm5v1"))))
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(properties
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`((upstream-name . "ActiveDriverWGS")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biostrings" ,r-biostrings)
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("r-bsgenome" ,r-bsgenome)
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("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicranges" ,r-genomicranges)
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("r-iranges" ,r-iranges)
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("r-plyr" ,r-plyr)
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("r-s4vectors" ,r-s4vectors)))
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(home-page "https://cran.r-project.org/web/packages/ActiveDriverWGS/")
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(synopsis "Driver discovery tool for cancer whole genomes")
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(description
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"This package provides a method for finding an enrichment of cancer
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simple somatic mutations (SNVs and Indels) in functional elements across the
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human genome. ActiveDriverWGS detects coding and noncoding driver elements
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using whole genome sequencing data.")
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(license license:gpl3)))
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