gnu: python-plotly: Update to 4.8.1.
But keep version 2.4.1 around for packages that still need it and for python2 support. * gnu/packages/graph.scm (python-plotly): Update to 4.8.1. [source]: Use git-fetch so that tests are also included. [arguments]: Enable tests. [home-page]: Follow redirect. (python-plotly-2.4.1): New variable. (python2-plotly): Inherit from python-plotly-2.4.1. * gnu/packages/bioinformatics.scm (python-deeptools)[native-inputs]: Depend on python-plotly-2.4.1. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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@ -2431,7 +2431,7 @@ (define-public python-deeptools
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("python-pysam" ,python-pysam)
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("python-scipy" ,python-scipy)
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("python-deeptoolsintervals" ,python-deeptoolsintervals)
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("python-plotly" ,python-plotly)))
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("python-plotly" ,python-plotly-2.4.1)))
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(home-page "https://pypi.org/project/deepTools/")
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(synopsis "Useful tools for exploring deep sequencing data")
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(description "This package addresses the challenge of handling large amounts
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@ -5,6 +5,7 @@
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;;; Copyright © 2019 Efraim Flashner <efraim@flashner.co.il>
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;;; Copyright © 2019 Andreas Enge <andreas@enge.fr>
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;;; Copyright © 2020 Alexander Krotov <krotov@iitp.ru>
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;;; Copyright © 2020 Pierre Langlois <pierre.langlos@gmx.com>
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;;;
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;;; This file is part of GNU Guix.
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;;;
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@ -235,6 +236,58 @@ (define-public r-rbiofabric
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(define-public python-plotly
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(package
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(name "python-plotly")
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(version "4.8.1")
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/plotly/plotly.py.git")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"08ab677gr85m10zhixr6dnmlfws8q6sra7nhyb8nf3r8dx1ffqhz"))))
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(build-system python-build-system)
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(arguments
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`(#:phases
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(modify-phases %standard-phases
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(add-after 'unpack 'chdir
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(lambda _
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(chdir "packages/python/plotly")
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#t))
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(replace 'check
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(lambda _
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(invoke "pytest" "-x" "plotly/tests/test_core")
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(invoke "pytest" "-x" "plotly/tests/test_io")
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;; FIXME: Add optional dependencies and enable their tests.
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;; (invoke "pytest" "-x" "plotly/tests/test_optional")
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(invoke "pytest" "_plotly_utils/tests")))
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(add-before 'reset-gzip-timestamps 'make-files-writable
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(lambda* (#:key outputs #:allow-other-keys)
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(let ((out (assoc-ref outputs "out")))
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(for-each (lambda (file) (chmod file #o644))
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(find-files out "\\.gz"))
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#t))))))
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(native-inputs
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`(("python-pytest" ,python-pytest)))
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(propagated-inputs
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`(("python-decorator" ,python-decorator)
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("python-ipywidgets" ,python-ipywidgets)
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("python-pandas" ,python-pandas)
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("python-requests" ,python-requests)
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("python-retrying" ,python-retrying)
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("python-six" ,python-six)
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("python-statsmodels" ,python-statsmodels)
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("python-xarray" ,python-xarray)))
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(home-page "https://plotly.com/python/")
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(synopsis "Interactive plotting library for Python")
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(description "Plotly's Python graphing library makes interactive,
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publication-quality graphs online. Examples of how to make line plots, scatter
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plots, area charts, bar charts, error bars, box plots, histograms, heatmaps,
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subplots, multiple-axes, polar charts, and bubble charts. ")
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(license license:expat)))
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(define-public python-plotly-2.4.1
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(package (inherit python-plotly)
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(version "2.4.1")
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(source
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(origin
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@ -243,9 +296,7 @@ (define-public python-plotly
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(sha256
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(base32
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"0s9gk2fl53x8wwncs3fwii1vzfngr0sskv15v3mpshqmrqfrk27m"))))
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(build-system python-build-system)
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(arguments
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'(#:tests? #f)) ; The tests are not distributed in the release
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(native-inputs '())
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(propagated-inputs
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`(("python-decorator" ,python-decorator)
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("python-nbformat" ,python-nbformat)
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@ -253,16 +304,11 @@ (define-public python-plotly
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("python-pytz" ,python-pytz)
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("python-requests" ,python-requests)
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("python-six" ,python-six)))
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(home-page "https://plot.ly/python/")
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(synopsis "Interactive plotting library for Python")
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(description "Plotly's Python graphing library makes interactive,
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publication-quality graphs online. Examples of how to make line plots, scatter
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plots, area charts, bar charts, error bars, box plots, histograms, heatmaps,
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subplots, multiple-axes, polar charts, and bubble charts. ")
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(license license:expat)))
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(arguments
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'(#:tests? #f)))) ; The tests are not distributed in the release
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(define-public python2-plotly
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(package-with-python2 python-plotly))
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(package-with-python2 python-plotly-2.4.1))
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(define-public python-louvain
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(package
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