gnu: r-mutationalpatterns: Update to 3.0.1.
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 3.0.1. [native-inputs]: Add r-knitr. [propagated-inputs]: Add r-bsgenome, r-dplyr, r-ggalluvial, r-magrittr, r-purrr, r-stringr, r-tibble, and r-tidyr; remove r-reshape2 and r-summarizedexperiment.
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@ -8943,33 +8943,40 @@ (define-public rcas-web
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(define-public r-mutationalpatterns
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(define-public r-mutationalpatterns
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(package
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(package
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(name "r-mutationalpatterns")
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(name "r-mutationalpatterns")
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(version "2.0.0")
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(version "3.0.1")
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(source
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(source
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(origin
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(origin
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(method url-fetch)
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(method url-fetch)
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(uri (bioconductor-uri "MutationalPatterns" version))
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(uri (bioconductor-uri "MutationalPatterns" version))
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(sha256
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(sha256
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(base32
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(base32
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"02lyjiabyhmifycksvpcx29a0pb7z9xjw0hgg8n0sd0dy3afqhcm"))))
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"1988kjjgq8af0hj7chhpxi88717wwmzs9qgrwapjh0hm2hjwhn35"))))
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(build-system r-build-system)
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(build-system r-build-system)
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(propagated-inputs
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(propagated-inputs
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`(("r-biocgenerics" ,r-biocgenerics)
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`(("r-biocgenerics" ,r-biocgenerics)
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("r-biostrings" ,r-biostrings)
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("r-biostrings" ,r-biostrings)
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("r-bsgenome" ,r-bsgenome)
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;; These two packages are suggested packages
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;; These two packages are suggested packages
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("r-bsgenome-hsapiens-1000g" ,r-bsgenome-hsapiens-1000genomes-hs37d5)
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("r-bsgenome-hsapiens-1000g" ,r-bsgenome-hsapiens-1000genomes-hs37d5)
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("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
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("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
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("r-genomicranges" ,r-genomicranges)
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("r-cowplot" ,r-cowplot)
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("r-dplyr" ,r-dplyr)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicranges" ,r-genomicranges)
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("r-ggalluvial" ,r-ggalluvial)
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("r-ggdendro" ,r-ggdendro)
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("r-ggplot2" ,r-ggplot2)
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("r-ggplot2" ,r-ggplot2)
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("r-iranges" ,r-iranges)
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("r-iranges" ,r-iranges)
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("r-magrittr" ,r-magrittr)
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("r-nmf" ,r-nmf)
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("r-nmf" ,r-nmf)
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("r-plyr" ,r-plyr)
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("r-pracma" ,r-pracma)
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("r-pracma" ,r-pracma)
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("r-reshape2" ,r-reshape2)
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("r-purrr" ,r-purrr)
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("r-cowplot" ,r-cowplot)
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("r-ggdendro" ,r-ggdendro)
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("r-s4vectors" ,r-s4vectors)
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("r-s4vectors" ,r-s4vectors)
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("r-summarizedexperiment" ,r-summarizedexperiment)
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("r-stringr" ,r-stringr)
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("r-tibble" ,r-tibble)
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("r-tidyr" ,r-tidyr)
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("r-variantannotation" ,r-variantannotation)))
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("r-variantannotation" ,r-variantannotation)))
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(home-page "https://bioconductor.org/packages/MutationalPatterns/")
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(home-page "https://bioconductor.org/packages/MutationalPatterns/")
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(synopsis "Extract and visualize mutational patterns in genomic data")
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(synopsis "Extract and visualize mutational patterns in genomic data")
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