gnu: Add trf.
* gnu/packages/bioinformatics.scm (trf): New variable.
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@ -2822,6 +2822,30 @@ (define-public delly
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accurately delineate genomic rearrangements throughout the genome.")
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(license license:gpl3+)))
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(define-public trf
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(package
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(name "trf")
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(version "4.09.1")
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/Benson-Genomics-Lab/TRF")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32 "0fhwr4s1mf8nw8fr5imwjvjr42b59p97zr961ifm8xl1bajz4wpg"))))
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(build-system gnu-build-system)
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(home-page "https://github.com/Benson-Genomics-Lab/TRF")
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(synopsis "Tandem Repeats Finder: a program to analyze DNA sequences")
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(description "A tandem repeat in DNA is two or more adjacent, approximate
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copies of a pattern of nucleotides. Tandem Repeats Finder is a program to
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locate and display tandem repeats in DNA sequences. In order to use the
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program, the user submits a sequence in FASTA format. The output consists of
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two files: a repeat table file and an alignment file. Submitted sequences may
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be of arbitrary length. Repeats with pattern size in the range from 1 to 2000
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bases are detected.")
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(license license:agpl3+)))
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(define-public diamond
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(package
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(name "diamond")
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