gnu: Add trf.

* gnu/packages/bioinformatics.scm (trf): New variable.
This commit is contained in:
Ricardo Wurmus 2021-01-25 15:34:23 +01:00
parent 09ab0d42b0
commit 6d3cafa086
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@ -2822,6 +2822,30 @@ (define-public delly
accurately delineate genomic rearrangements throughout the genome.")
(license license:gpl3+)))
(define-public trf
(package
(name "trf")
(version "4.09.1")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/Benson-Genomics-Lab/TRF")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "0fhwr4s1mf8nw8fr5imwjvjr42b59p97zr961ifm8xl1bajz4wpg"))))
(build-system gnu-build-system)
(home-page "https://github.com/Benson-Genomics-Lab/TRF")
(synopsis "Tandem Repeats Finder: a program to analyze DNA sequences")
(description "A tandem repeat in DNA is two or more adjacent, approximate
copies of a pattern of nucleotides. Tandem Repeats Finder is a program to
locate and display tandem repeats in DNA sequences. In order to use the
program, the user submits a sequence in FASTA format. The output consists of
two files: a repeat table file and an alignment file. Submitted sequences may
be of arbitrary length. Repeats with pattern size in the range from 1 to 2000
bases are detected.")
(license license:agpl3+)))
(define-public diamond
(package
(name "diamond")