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gnu: Add python-scikit-optimize.

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* gnu/packages/python-science.scm (python-scikit-optimize): New variable.
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Ricardo Wurmus 2023-03-24 17:58:44 +01:00
parent 33bb60fe02
commit 6d132c5ebf
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1 changed files with 47 additions and 19 deletions
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66
gnu/packages/python-science.scm
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@ -245,33 +245,61 @@ (define-public python-scikit-image
"Scikit-image is a collection of algorithms for image processing.")
(license license:bsd-3)))
(define-public python-scikit-optimize
(package
(name "python-scikit-optimize")
(version "0.9.0")
(source (origin
(method url-fetch)
(uri (pypi-uri "scikit-optimize" version))
(sha256
(base32
"0230ya8bwrzxjwcy2vz23a3hg6caggnnmg2vq1f9zz2797kckn3p"))))
(build-system pyproject-build-system)
(propagated-inputs
(list python-joblib
python-matplotlib
python-numpy
python-pyaml
python-scikit-learn
python-scipy))
(native-inputs
(list python-pytest))
(home-page "https://scikit-optimize.github.io/")
(synopsis "Sequential model-based optimization toolbox")
(description "Scikit-Optimize, or @code{skopt}, is a simple and efficient
library to minimize (very) expensive and noisy black-box functions. It
implements several methods for sequential model-based optimization.
@code{skopt} aims to be accessible and easy to use in many contexts.")
(license license:bsd-3)))
(define-public python-scikit-allel
(package
(name "python-scikit-allel")
(version "1.3.5")
(source
(origin
(method url-fetch)
(uri (pypi-uri "scikit-allel" version))
(sha256
(base32 "1vg88ng6gd175gzk39iz1drxig5l91dyx398w2kbw3w8036zv8gj"))))
(origin
(method url-fetch)
(uri (pypi-uri "scikit-allel" version))
(sha256
(base32 "1vg88ng6gd175gzk39iz1drxig5l91dyx398w2kbw3w8036zv8gj"))))
(build-system python-build-system)
(arguments
(list
#:phases
#~(modify-phases %standard-phases
(replace 'check
(lambda* (#:key tests? #:allow-other-keys)
(when tests?
(invoke "python" "setup.py" "build_ext" "--inplace")
(invoke "python" "-m" "pytest" "-v" "allel"
;; AttributeError: 'Dataset' object has no attribute 'asstr'
"-k" (string-append
"not test_vcf_to_hdf5"
" and not test_vcf_to_hdf5_exclude"
" and not test_vcf_to_hdf5_rename"
" and not test_vcf_to_hdf5_group"
" and not test_vcf_to_hdf5_ann"))))))))
#:phases
#~(modify-phases %standard-phases
(replace 'check
(lambda* (#:key tests? #:allow-other-keys)
(when tests?
(invoke "python" "setup.py" "build_ext" "--inplace")
(invoke "python" "-m" "pytest" "-v" "allel"
;; AttributeError: 'Dataset' object has no attribute 'asstr'
"-k" (string-append
"not test_vcf_to_hdf5"
" and not test_vcf_to_hdf5_exclude"
" and not test_vcf_to_hdf5_rename"
" and not test_vcf_to_hdf5_group"
" and not test_vcf_to_hdf5_ann"))))))))
(propagated-inputs
(list python-dask
python-numpy))