gnu: bedtools: Update to 2.29.2.

* gnu/packages/bioinformatics.scm (bedtools): Update to 2.29.2.
[native-inputs]: Replace python-2 with python-wrapper.
[license]: Change to Expat.
This commit is contained in:
Ricardo Wurmus 2020-02-27 17:37:32 +01:00
parent d24b3b0213
commit 6c32e9b4dc
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@ -410,7 +410,7 @@ (define-public bedops
(define-public bedtools
(package
(name "bedtools")
(version "2.27.1")
(version "2.29.2")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/arq5x/bedtools2/releases/"
@ -418,7 +418,7 @@ (define-public bedtools
"bedtools-" version ".tar.gz"))
(sha256
(base32
"1ndg5yknrxl4djx8ddzgk12rrbiidfpmkkg5z3f95jzryfxarhn8"))))
"0m3hk6548846w83a9s5drsczvy67n2azx41kj71n03klb2gbzwg3"))))
(build-system gnu-build-system)
(arguments
'(#:test-target "test"
@ -427,7 +427,8 @@ (define-public bedtools
#:phases
(modify-phases %standard-phases
(delete 'configure))))
(native-inputs `(("python" ,python-2)))
(native-inputs
`(("python" ,python-wrapper)))
(inputs
`(("samtools" ,samtools)
("zlib" ,zlib)))
@ -440,7 +441,7 @@ (define-public bedtools
allows one to intersect, merge, count, complement, and shuffle genomic
intervals from multiple files in widely-used genomic file formats such as BAM,
BED, GFF/GTF, VCF.")
(license license:gpl2)))
(license license:expat)))
;; Later releases of bedtools produce files with more columns than
;; what Ribotaper expects.