gnu: bedtools: Update to 2.29.2.
* gnu/packages/bioinformatics.scm (bedtools): Update to 2.29.2. [native-inputs]: Replace python-2 with python-wrapper. [license]: Change to Expat.
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@ -410,7 +410,7 @@ (define-public bedops
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(define-public bedtools
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(package
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(name "bedtools")
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(version "2.27.1")
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(version "2.29.2")
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(source (origin
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(method url-fetch)
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(uri (string-append "https://github.com/arq5x/bedtools2/releases/"
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@ -418,7 +418,7 @@ (define-public bedtools
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"bedtools-" version ".tar.gz"))
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(sha256
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(base32
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"1ndg5yknrxl4djx8ddzgk12rrbiidfpmkkg5z3f95jzryfxarhn8"))))
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"0m3hk6548846w83a9s5drsczvy67n2azx41kj71n03klb2gbzwg3"))))
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(build-system gnu-build-system)
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(arguments
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'(#:test-target "test"
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@ -427,7 +427,8 @@ (define-public bedtools
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#:phases
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(modify-phases %standard-phases
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(delete 'configure))))
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(native-inputs `(("python" ,python-2)))
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(native-inputs
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`(("python" ,python-wrapper)))
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(inputs
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`(("samtools" ,samtools)
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("zlib" ,zlib)))
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@ -440,7 +441,7 @@ (define-public bedtools
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allows one to intersect, merge, count, complement, and shuffle genomic
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intervals from multiple files in widely-used genomic file formats such as BAM,
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BED, GFF/GTF, VCF.")
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(license license:gpl2)))
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(license license:expat)))
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;; Later releases of bedtools produce files with more columns than
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;; what Ribotaper expects.
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