gnu: Add r-abadata.
* gnu/packages/bioconductor.scm (r-abadata): New variable.
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@ -738,6 +738,43 @@ (define-public r-do-db
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;;; Experiment data
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(define-public r-abadata
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(package
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(name "r-abadata")
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(version "1.12.0")
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(source (origin
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(method url-fetch)
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;; We cannot use bioconductor-uri here because this tarball is
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;; located under "data/experiment/" instead of "bioc/".
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(uri (string-append "https://www.bioconductor.org/packages/"
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"release/data/experiment/src/contrib/"
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"ABAData_" version ".tar.gz"))
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(sha256
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(base32
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"1bmj341xcymlrk02gss5vvrqc4ddas0rdw39lnpsj98hq6n11p5z"))))
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(properties
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`((upstream-name . "ABAData")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-annotationdbi" ,r-annotationdbi)))
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(home-page "https://www.bioconductor.org/packages/ABAData/")
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(synopsis "Gene expression in human brain regions from Allen Brain Atlas")
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(description
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"This package provides the data for the gene expression enrichment
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analysis conducted in the package ABAEnrichment. The package includes three
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datasets which are derived from the Allen Brain Atlas:
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@enumerate
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@item Gene expression data from Human Brain (adults) averaged across donors,
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@item Gene expression data from the Developing Human Brain pooled into five
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age categories and averaged across donors, and
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@item a developmental effect score based on the Developing Human Brain
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expression data.
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@end enumerate
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All datasets are restricted to protein coding genes.")
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(license license:gpl2+)))
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(define-public r-hsmmsinglecell
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(package
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(name "r-hsmmsinglecell")
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