gnu: Add nanosv.
* gnu/packages/bioinformatics.scm (nanosv): New variable.
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@ -14637,3 +14637,26 @@ (define-public python-pyvcf
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(description "This package provides a @acronym{VCF,Variant Call Format}
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parser for Python.")
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(license license:expat)))
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(define-public nanosv
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(package
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(name "nanosv")
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(version "1.2.4")
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(source (origin
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(method url-fetch)
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(uri (pypi-uri "NanoSV" version))
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(sha256
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(base32
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"1wl2daj0bwrl8fx5xi8j8hfs3mp3vg3qycy66538n032v1qkc6xg"))))
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(build-system python-build-system)
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(inputs
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`(("python-configparser" ,python-configparser)
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("python-pysam" ,python-pysam)
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("python-pyvcf" ,python-pyvcf)))
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(home-page "https://github.com/mroosmalen/nanosv")
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(synopsis "Structural variation detection tool for Oxford Nanopore data.")
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(description "NanoSV is a software package that can be used to identify
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structural genomic variations in long-read sequencing data, such as data
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produced by Oxford Nanopore Technologies’ MinION, GridION or PromethION
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instruments, or Pacific Biosciences RSII or Sequel sequencers.")
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(license license:expat)))
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