gnu: Add nanosv.

* gnu/packages/bioinformatics.scm (nanosv): New variable.
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Lars-Dominik Braun 2021-07-20 13:50:23 +02:00
parent 2b665b8a49
commit 690df95d1a
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@ -14637,3 +14637,26 @@ (define-public python-pyvcf
(description "This package provides a @acronym{VCF,Variant Call Format}
parser for Python.")
(license license:expat)))
(define-public nanosv
(package
(name "nanosv")
(version "1.2.4")
(source (origin
(method url-fetch)
(uri (pypi-uri "NanoSV" version))
(sha256
(base32
"1wl2daj0bwrl8fx5xi8j8hfs3mp3vg3qycy66538n032v1qkc6xg"))))
(build-system python-build-system)
(inputs
`(("python-configparser" ,python-configparser)
("python-pysam" ,python-pysam)
("python-pyvcf" ,python-pyvcf)))
(home-page "https://github.com/mroosmalen/nanosv")
(synopsis "Structural variation detection tool for Oxford Nanopore data.")
(description "NanoSV is a software package that can be used to identify
structural genomic variations in long-read sequencing data, such as data
produced by Oxford Nanopore Technologies MinION, GridION or PromethION
instruments, or Pacific Biosciences RSII or Sequel sequencers.")
(license license:expat)))