gnu: Add python-pynbody.
* gnu/packages/astronomy.scm: (python-pynbody): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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@ -1739,6 +1739,75 @@ (define-public python-pyerfa
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functions, so that they can be called with scalar or array inputs.")
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functions, so that they can be called with scalar or array inputs.")
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(license license:bsd-3)))
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(license license:bsd-3)))
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(define-public python-pynbody
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(package
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(name "python-pynbody")
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(version "1.2.3")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "pynbody" version))
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(sha256
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(base32 "1jxwk2s4qz1znvyak2lj7ld01kl1jh87xp81ki7a8dz1gcy93fkx"))))
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(build-system python-build-system)
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(arguments
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(list #:phases
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#~(modify-phases %standard-phases
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(add-after 'unpack 'disable-tests-require-testdata
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(lambda _
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;; Disable tests which need to download additional 1.0GiB+
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;; of test data archive from
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;; http://star.ucl.ac.uk/~app/testdata.tar.gz
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;; https://github.com/pynbody/pynbody/blob/ \
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;; f4bd482dc47532831b3ec115c7cb07149d61bfc5/ \
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;; .github/workflows/build-test.yaml#L41
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(with-directory-excursion "tests"
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(for-each delete-file
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'("gravity_test.py"
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"adaptahop_test.py"
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"ahf_halos_test.py"
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"array_test.py"
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"bridge_test.py"
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"family_test.py"
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"partial_tipsy_test.py"
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"snapshot_test.py"
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"test_profile.py"
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"gadget_test.py"
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"gadgethdf_test.py"
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"grafic_test.py"
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"halotools_test.py"
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"nchilada_test.py"
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"ramses_new_ptcl_format_test.py"
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"ramses_test.py"
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"rockstar_test.py"
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"sph_image_test.py"
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"sph_smooth_test.py"
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"subfind_test.py"
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"subfindhdf_gadget4_test.py"
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"tipsy_test.py")))))
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(replace 'check
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(lambda* (#:key tests? inputs outputs #:allow-other-keys)
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(when tests?
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(add-installed-pythonpath inputs outputs)
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(setenv "HOME" "/tmp")
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(invoke "pytest" "-vv")))))))
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(native-inputs
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(list python-cython
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python-pandas
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python-pytest))
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(propagated-inputs
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(list python-h5py
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python-matplotlib
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python-numpy
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python-posix-ipc
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python-scipy))
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(home-page "https://pynbody.github.io/pynbody/index.html")
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(synopsis "Light-weight astronomical N-body/SPH analysis for python")
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(description "@code{Pynbody} is an analysis framework for N-body and hydrodynamic
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astrophysical simulations supporting PKDGRAV/Gasoline, Gadget, Gadget4/Arepo,
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N-Chilada and RAMSES AMR outputs.")
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(license license:gpl3+)))
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(define-public python-sep
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(define-public python-sep
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(package
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(package
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(inherit libsep)
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(inherit libsep)
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