gnu: Add r-copykat.

* gnu/packages/bioinformatics.scm (r-copykat): New variable.
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zimoun 2022-04-08 16:59:54 +02:00 committed by Ricardo Wurmus
parent b96c0b051d
commit 6413d0898b
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@ -9138,6 +9138,44 @@ (define-public r-cellchat
communication networks from scRNA-seq data.")
(license license:gpl3))))
(define-public r-copykat
(let ((commit ;no tag
"256de33dfc1b80a1a0ac9e098c5557f95a4e0d53")
(revision "0"))
(package
(name "r-copykat")
(version (git-version "1.0.8" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/navinlabcode/copykat")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"0ckyqnial3imcqlgd6xfgwk5w977l1i87sx4kdbwdvg40w0vh1j8"))))
(properties `((upstream-name . "copykat")))
(build-system r-build-system)
(propagated-inputs
(list r-cluster
r-dlm
r-gplots
r-mcmcpack
r-mixtools
r-paralleldist
r-rcolorbrewer))
(native-inputs (list r-knitr))
(home-page "https://github.com/navinlabcode/copykat")
(synopsis "Inference of genomic copy number from single cell RNAseq data")
(description
"This package Copynumber KAryotyping of Tumors infers genomic copy
number and subclonal structure of human tumors using integrative Bayesian
approaches to identify genome-wide aneuploidy at 5MB resolution in single
cells data. It separates tumor cells and tumor subclones from normal cells
using high-throughput sc-RNAseq data.")
(license license:gpl2))))
(define-public sambamba
(package
(name "sambamba")