gnu: seqtk: Update to 1.3.
* gnu/packages/bioinformatics.scm (seqtk): Update to 1.3. [source]: Remove outdated snippet. [arguments]: Use INVOKE and return #T unconditionally.
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1 changed files with 5 additions and 12 deletions
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@ -5868,7 +5868,7 @@ (define-public seqmagick
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(define-public seqtk
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(package
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(name "seqtk")
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(version "1.2")
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(version "1.3")
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(source (origin
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(method git-fetch)
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(uri (git-reference
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@ -5877,15 +5877,7 @@ (define-public seqtk
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(file-name (git-file-name name version))
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(sha256
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(base32
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"1mdkgmzdy734a0na9hxbl4k41jjkm87bvjbm7bdbh50fsra86f93"))
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(modules '((guix build utils)))
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(snippet
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'(begin
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;; Remove extraneous header files, as is done in the seqtk
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;; master branch.
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(for-each (lambda (file) (delete-file file))
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(list "ksort.h" "kstring.h" "kvec.h"))
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#t))))
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"1bfzlqa84b5s1qi22blmmw2s8xdyp9h9ydcq22pfjhh5gab3yz6l"))))
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(build-system gnu-build-system)
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(arguments
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`(#:phases
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@ -5893,11 +5885,12 @@ (define-public seqtk
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(delete 'configure)
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(replace 'check
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;; There are no tests, so we just run a sanity check.
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(lambda _ (zero? (system* "./seqtk" "seq"))))
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(lambda _ (invoke "./seqtk" "seq") #t))
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(replace 'install
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(lambda* (#:key outputs #:allow-other-keys)
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(let ((bin (string-append (assoc-ref outputs "out") "/bin/")))
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(install-file "seqtk" bin)))))))
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(install-file "seqtk" bin)
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#t))))))
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(inputs
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`(("zlib" ,zlib)))
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(home-page "https://github.com/lh3/seqtk")
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