gnu: Add r-lefser.

* gnu/packages/bioconductor.scm (r-lefser): New variable.
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Ricardo Wurmus 2023-05-02 10:13:08 +02:00
parent 854c57c352
commit 62ed97c07d
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@ -12320,6 +12320,29 @@ (define-public r-methylumi
and Infinium HD arrays are also included.")
(license license:gpl2)))
(define-public r-lefser
(package
(name "r-lefser")
(version "1.10.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "lefser" version))
(sha256
(base32
"0wi70b4k7s0xj7bh46s0x0fckqc5qspzq8k4k913vg6cnhqgw2dd"))))
(properties `((upstream-name . "lefser")))
(build-system r-build-system)
(propagated-inputs (list r-coin r-ggplot2 r-mass r-summarizedexperiment))
(native-inputs (list r-knitr))
(home-page "https://github.com/waldronlab/lefser")
(synopsis "LEfSE method for microbiome biomarker discovery")
(description
"Lefser is an implementation in R of the popular \"LDA Effect
Size\" (LEfSe) method for microbiome biomarker discovery. It uses the
Kruskal-Wallis test, Wilcoxon-Rank Sum test, and Linear Discriminant Analysis
to find biomarkers of groups and sub-groups.")
(license license:artistic2.0)))
(define-public r-lumi
(package
(name "r-lumi")