gnu: Add raxml.

* gnu/packages/bioinformatics.scm (raxml): New variable.
This commit is contained in:
Ben Woodcroft 2016-07-12 16:17:29 +10:00
parent 024130d258
commit 608dd93267
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@ -3380,6 +3380,46 @@ (define-public prodigal
partial genes, and identifies translation initiation sites.")
(license license:gpl3+)))
(define-public raxml
(package
(name "raxml")
(version "8.2.9")
(source
(origin
(method url-fetch)
(uri
(string-append
"https://github.com/stamatak/standard-RAxML/archive/v"
version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"1pv8p2fy67y21a9y4cm7xpvxqjwz2v4201flfjshdq1p8j52rqf7"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; There are no tests.
;; Use 'standard' Makefile rather than SSE or AVX ones.
#:make-flags (list "-f" "Makefile.HYBRID.gcc")
#:phases
(modify-phases %standard-phases
(delete 'configure)
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
(bin (string-append out "/bin"))
(executable "raxmlHPC-HYBRID"))
(install-file executable bin)
(symlink (string-append bin "/" executable) "raxml"))
#t)))))
(inputs
`(("openmpi" ,openmpi)))
(home-page "http://sco.h-its.org/exelixis/web/software/raxml/index.html")
(synopsis "Randomized Axelerated Maximum Likelihood phylogenetic trees")
(description
"RAxML is a tool for phylogenetic analysis and post-analysis of large
phylogenies.")
(license license:gpl2+)))
(define-public rsem
(package
(name "rsem")