From 5f5e3873d735d13824c172d779e6095d6947f340 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 17 Dec 2020 10:40:30 +0100 Subject: [PATCH] import/cran: Add input style "specification". * guix/import/cran.scm (%input-style): New parameter. (format-inputs): Use it. * guix/scripts/import/cran.scm (guix-import-cran): Set the %input-style parameter. (%options): Add "--style" option. * doc/guix.texi (Invoking guix import): Document it. --- doc/guix.texi | 7 ++++++ guix/import/cran.scm | 13 +++++++++-- guix/scripts/import/cran.scm | 45 ++++++++++++++++++++---------------- 3 files changed, 43 insertions(+), 22 deletions(-) diff --git a/doc/guix.texi b/doc/guix.texi index 392baf5910..74cd86be37 100644 --- a/doc/guix.texi +++ b/doc/guix.texi @@ -11009,6 +11009,13 @@ When @option{--recursive} is added, the importer will traverse the dependency graph of the given upstream package recursively and generate package expressions for all those packages that are not yet in Guix. +When @option{--style=specification} is added, the importer will generate +package definitions whose inputs are package specifications instead of +references to package variables. This is useful when generated package +definitions are to be appended to existing user modules, as the list of +used package modules need not be changed. The default is +@option{--style=variable}. + When @option{--archive=bioconductor} is added, metadata is imported from @uref{https://www.bioconductor.org/, Bioconductor}, a repository of R packages for the analysis and comprehension of high-throughput diff --git a/guix/import/cran.scm b/guix/import/cran.scm index 9d38be7a1e..fd44d80915 100644 --- a/guix/import/cran.scm +++ b/guix/import/cran.scm @@ -51,7 +51,9 @@ #:use-module (guix upstream) #:use-module (guix packages) #:use-module (gnu packages) - #:export (cran->guix-package + #:export (%input-style + + cran->guix-package bioconductor->guix-package cran-recursive-import %cran-updater @@ -74,6 +76,9 @@ ;;; ;;; Code: +(define %input-style + (make-parameter 'variable)) ; or 'specification + (define string->license (match-lambda ("AGPL-3" 'agpl3+) @@ -128,7 +133,11 @@ (define (format-inputs names) "Generate a sorted list of package inputs from a list of package NAMES." (map (lambda (name) - (list name (list 'unquote (string->symbol name)))) + (case (%input-style) + ((specification) + (list name (list 'unquote (list 'specification->package name)))) + (else + (list name (list 'unquote (string->symbol name)))))) (sort names string-cisymbol arg) (alist-delete 'repo result)))) + (option '(#\s "style") #t #f + (lambda (opt name arg result) + (alist-cons 'style (string->symbol arg) + (alist-delete 'style result)))) (option '(#\r "recursive") #f #f (lambda (opt name arg result) (alist-cons 'recursive #t result))) @@ -93,23 +97,24 @@ Import and convert the CRAN package for PACKAGE-NAME.\n")) value) (_ #f)) (reverse opts)))) - (match args - ((package-name) - (if (assoc-ref opts 'recursive) - ;; Recursive import - (with-error-handling - (map package->definition - (filter identity - (cran-recursive-import package-name - #:repo (or (assoc-ref opts 'repo) 'cran))))) - ;; Single import - (let ((sexp (cran->guix-package package-name - #:repo (or (assoc-ref opts 'repo) 'cran)))) - (unless sexp - (leave (G_ "failed to download description for package '~a'~%") - package-name)) - sexp))) - (() - (leave (G_ "too few arguments~%"))) - ((many ...) - (leave (G_ "too many arguments~%")))))) + (parameterize ((%input-style (assoc-ref opts 'style))) + (match args + ((package-name) + (if (assoc-ref opts 'recursive) + ;; Recursive import + (with-error-handling + (map package->definition + (filter identity + (cran-recursive-import package-name + #:repo (or (assoc-ref opts 'repo) 'cran))))) + ;; Single import + (let ((sexp (cran->guix-package package-name + #:repo (or (assoc-ref opts 'repo) 'cran)))) + (unless sexp + (leave (G_ "failed to download description for package '~a'~%") + package-name)) + sexp))) + (() + (leave (G_ "too few arguments~%"))) + ((many ...) + (leave (G_ "too many arguments~%")))))))