gnu: Add r-biscuiteer.
* gnu/packages/bioconductor.scm (r-biscuiteer): New variable.
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@ -14602,6 +14602,57 @@ (define-public r-dmrseq
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interest on transformed methylation proportions.")
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(license license:expat)))
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(define-public r-biscuiteer
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(package
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(name "r-biscuiteer")
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(version "1.6.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "biscuiteer" version))
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(sha256
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(base32
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"0f4kk4v2c5diq0fbvyvgwjd1kjk9izr6n9wfrlrr7wbx4pz3c3h6"))))
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(properties `((upstream-name . "biscuiteer")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biobase" ,r-biobase)
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("r-biocgenerics" ,r-biocgenerics)
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("r-biocparallel" ,r-biocparallel)
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("r-biscuiteerdata" ,r-biscuiteerdata)
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("r-bsseq" ,r-bsseq)
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("r-data-table" ,r-data-table)
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("r-delayedmatrixstats" ,r-delayedmatrixstats)
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("r-dmrseq" ,r-dmrseq)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicranges" ,r-genomicranges)
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("r-gtools" ,r-gtools)
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("r-hdf5array" ,r-hdf5array)
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("r-homo-sapiens" ,r-homo-sapiens)
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("r-impute" ,r-impute)
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("r-matrix" ,r-matrix)
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("r-matrixstats" ,r-matrixstats)
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("r-mus-musculus" ,r-mus-musculus)
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("r-qdnaseq" ,r-qdnaseq)
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("r-qualv" ,r-qualv)
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("r-r-utils" ,r-r-utils)
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("r-readr" ,r-readr)
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("r-rsamtools" ,r-rsamtools)
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("r-rtracklayer" ,r-rtracklayer)
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("r-s4vectors" ,r-s4vectors)
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("r-summarizedexperiment" ,r-summarizedexperiment)
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("r-variantannotation" ,r-variantannotation)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://github.com/trichelab/biscuiteer")
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(synopsis "Convenience functions for the Biscuit package")
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(description
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"This package provides a test harness for bsseq loading of Biscuit
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output, summarization of WGBS data over defined regions and in mappable
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samples, with or without imputation, dropping of mostly-NA rows, age
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estimates, etc.")
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(license license:gpl3)))
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(define-public r-tximeta
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(package
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(name "r-tximeta")
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