gnu: Add r-biscuiteer.

* gnu/packages/bioconductor.scm (r-biscuiteer): New variable.
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Ricardo Wurmus 2021-09-07 14:39:45 +02:00
parent f051f68ca2
commit 5cfe5ddece
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@ -14602,6 +14602,57 @@ (define-public r-dmrseq
interest on transformed methylation proportions.")
(license license:expat)))
(define-public r-biscuiteer
(package
(name "r-biscuiteer")
(version "1.6.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "biscuiteer" version))
(sha256
(base32
"0f4kk4v2c5diq0fbvyvgwjd1kjk9izr6n9wfrlrr7wbx4pz3c3h6"))))
(properties `((upstream-name . "biscuiteer")))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-biocparallel" ,r-biocparallel)
("r-biscuiteerdata" ,r-biscuiteerdata)
("r-bsseq" ,r-bsseq)
("r-data-table" ,r-data-table)
("r-delayedmatrixstats" ,r-delayedmatrixstats)
("r-dmrseq" ,r-dmrseq)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicranges" ,r-genomicranges)
("r-gtools" ,r-gtools)
("r-hdf5array" ,r-hdf5array)
("r-homo-sapiens" ,r-homo-sapiens)
("r-impute" ,r-impute)
("r-matrix" ,r-matrix)
("r-matrixstats" ,r-matrixstats)
("r-mus-musculus" ,r-mus-musculus)
("r-qdnaseq" ,r-qdnaseq)
("r-qualv" ,r-qualv)
("r-r-utils" ,r-r-utils)
("r-readr" ,r-readr)
("r-rsamtools" ,r-rsamtools)
("r-rtracklayer" ,r-rtracklayer)
("r-s4vectors" ,r-s4vectors)
("r-summarizedexperiment" ,r-summarizedexperiment)
("r-variantannotation" ,r-variantannotation)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://github.com/trichelab/biscuiteer")
(synopsis "Convenience functions for the Biscuit package")
(description
"This package provides a test harness for bsseq loading of Biscuit
output, summarization of WGBS data over defined regions and in mappable
samples, with or without imputation, dropping of mostly-NA rows, age
estimates, etc.")
(license license:gpl3)))
(define-public r-tximeta
(package
(name "r-tximeta")