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gnu: python-tables: Build cython files from source.

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* gnu/packages/python-xyz.scm (python-tables)[source]: Remove generated C
files.
[arguments]: Remove trailing #T from build phases; use G-expression; override
library directories.
[inputs]: Add c-blosc and lzo.
This commit is contained in:
Ricardo Wurmus 2023-04-26 17:01:08 +02:00
parent 2d883cbd6d
commit 5bfce83dc4
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GPG key ID: 197A5888235FACAC
1 changed files with 47 additions and 34 deletions
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81
gnu/packages/python-xyz.scm
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@ -12880,47 +12880,60 @@ (define-public python-tables
(for-each delete-file-recursively
(find-files "." "__pycache__" #:directories? #t))
(for-each delete-file (find-files "." "\\.pyc$"))
#t))))
(for-each delete-file
(list "tables/_comp_bzip2.c"
"tables/_comp_lzo.c"
"tables/hdf5extension.c"
"tables/indexesextension.c"
"tables/linkextension.c"
"tables/lrucacheextension.c"
"tables/tableextension.c"
"tables/utilsextension.c"))))))
(build-system python-build-system)
(arguments
`(;; FIXME: python-build-system does not pass configure-flags to "build"
;; or "check", so we must override the build and check phases.
#:phases
(modify-phases %standard-phases
(add-after 'unpack 'use-gcc
(lambda _
(substitute* "setup.py"
(("^( +)compiler = new_compiler\\(\\)" line indent)
(string-append line
"\n"
indent
"compiler.set_executables(compiler='gcc',"
"compiler_so='gcc',"
"linker_exe='gcc',"
"linker_so='gcc -shared')")))
#t))
(add-after 'unpack 'disable-tuning
(lambda _
(substitute* "setup.py"
(("cpu_flags = .*")
"cpu_flags = ['sse2']\n"))
#t))
(replace 'build
(lambda* (#:key inputs #:allow-other-keys)
(invoke "python" "setup.py" "build"
(string-append "--hdf5="
(assoc-ref inputs "hdf5")))))
(replace 'check
(lambda* (#:key inputs #:allow-other-keys)
(invoke "python" "setup.py" "check"
(string-append "--hdf5="
(assoc-ref inputs "hdf5"))))))))
(list
#:phases
;; FIXME: python-build-system does not pass configure-flags to "build"
;; or "check", so we must override the build and check phases.
#~(modify-phases %standard-phases
(add-after 'unpack 'use-gcc
(lambda _
(substitute* "setup.py"
(("lib_dirs = \\[\\]")
(string-append "lib_dirs = ["
"'" #$(this-package-input "hdf5") "/lib',"
"'" #$(this-package-input "bzip2") "/lib',"
"'" #$(this-package-input "c-blosc") "/lib',"
"]"))
(("^( +)compiler = new_compiler\\(\\)" line indent)
(string-append line
"\n"
indent
"compiler.set_executables(compiler='gcc',"
"compiler_so='gcc',"
"linker_exe='gcc',"
"linker_so='gcc -shared')")))))
(add-after 'unpack 'disable-tuning
(lambda _
(substitute* "setup.py"
(("cpu_flags = .*")
"cpu_flags = ['sse2']\n"))))
(replace 'build
(lambda* (#:key inputs #:allow-other-keys)
(invoke "python" "setup.py" "build"
(string-append "--hdf5="
(assoc-ref inputs "hdf5")))))
(replace 'check
(lambda* (#:key inputs #:allow-other-keys)
(invoke "python" "setup.py" "check"
(string-append "--hdf5="
(assoc-ref inputs "hdf5"))))))))
(propagated-inputs
(list python-numexpr python-numpy))
(native-inputs
(list python-cython pkg-config))
(inputs
(list hdf5-1.10 bzip2 zlib))
(list c-blosc hdf5-1.10 bzip2 lzo zlib))
(home-page "https://www.pytables.org/")
(synopsis "Hierarchical datasets for Python")
(description "PyTables is a package for managing hierarchical datasets and