gnu: Add python-cooler.

* gnu/packages/bioinformatics.scm (python-cooler): New variable.
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Ricardo Wurmus 2018-09-05 16:00:04 +02:00 committed by Ricardo Wurmus
parent 80f4db91b1
commit 5bb9e0af8d
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@ -13578,3 +13578,40 @@ (define-public python-pyfaidx
"This package provides procedures for efficient pythonic random access to
fasta subsequences.")
(license license:bsd-3)))
(define-public python-cooler
(package
(name "python-cooler")
(version "0.7.11")
(source
(origin
(method url-fetch)
(uri (pypi-uri "cooler" version))
(sha256
(base32
"08k5nxnxa6qsbk15z5z0q01n28042k87wi4905hh95rzqib15mhx"))))
(build-system python-build-system)
(propagated-inputs
`(("python-biopython" ,python-biopython)
("python-click" ,python-click)
("python-cytoolz" ,python-cytoolz)
("python-dask" ,python-dask)
("python-h5py" ,python-h5py)
("python-multiprocess" ,python-multiprocess)
("python-pandas" ,python-pandas)
("python-pyfaidx" ,python-pyfaidx)
("python-pypairix" ,python-pypairix)
("python-pysam" ,python-pysam)
("python-scipy" ,python-scipy)))
(native-inputs
`(("python-mock" ,python-mock)
("python-nose" ,python-nose)
("python-numpydoc" ,python-numpydoc)
("python-sphinx" ,python-sphinx)))
(home-page "https://github.com/mirnylab/cooler")
(synopsis "Sparse binary format for genomic interaction matrices")
(description
"Cooler is a support library for a sparse, compressed, binary persistent
storage format, called @code{cool}, used to store genomic interaction data,
such as Hi-C contact matrices.")
(license license:bsd-3)))