gnu: r-bgx: Build without CPU tuning.
Fixes <https://issues.guix.gnu.org/57210>. * gnu/packages/bioconductor.scm (r-bgx)[arguments]: Add phase 'do-not-tune-cflags-for-reproducibility to patch configure.ac. [inputs]: Add boost. [native-inputs]: Add autoconf and automake.
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@ -35,6 +35,7 @@ (define-module (gnu packages bioconductor)
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#:use-module (guix git-download)
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#:use-module (guix git-download)
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#:use-module (guix build-system r)
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#:use-module (guix build-system r)
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#:use-module (gnu packages)
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#:use-module (gnu packages)
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#:use-module (gnu packages autotools)
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#:use-module (gnu packages base)
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#:use-module (gnu packages base)
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#:use-module (gnu packages bioinformatics)
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#:use-module (gnu packages bioinformatics)
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#:use-module (gnu packages boost)
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#:use-module (gnu packages boost)
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@ -12995,8 +12996,22 @@ (define-public r-bgx
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"0q2y4n6bcc9pvz5sgfkw1lrb00rrp7q29i1vh7srdfmfhgpyz6bk"))))
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"0q2y4n6bcc9pvz5sgfkw1lrb00rrp7q29i1vh7srdfmfhgpyz6bk"))))
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(properties `((upstream-name . "bgx")))
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(properties `((upstream-name . "bgx")))
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(build-system r-build-system)
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(build-system r-build-system)
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(arguments
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(list
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#:phases
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'(modify-phases %standard-phases
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(add-after 'unpack 'do-not-tune-cflags-for-reproducibility
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(lambda _
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(substitute* "configure.ac"
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(("AX_GCC_ARCHFLAG.*") ""))
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(delete-file "configure")
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(invoke "autoreconf" "-vif"))))))
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(inputs
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(list boost))
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(propagated-inputs
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(propagated-inputs
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(list r-affy r-biobase r-gcrma r-rcpp))
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(list r-affy r-biobase r-gcrma r-rcpp))
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(native-inputs
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(list autoconf automake))
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(home-page "https://bioconductor.org/packages/bgx/")
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(home-page "https://bioconductor.org/packages/bgx/")
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(synopsis "Bayesian gene expression")
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(synopsis "Bayesian gene expression")
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(description
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(description
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