gnu: Add r-rqc.

* gnu/packages/bioconductor.scm (r-rqc): New variable.
This commit is contained in:
Ricardo Wurmus 2019-05-10 13:26:05 +02:00
parent 5e0241db84
commit 496b024fde
No known key found for this signature in database
GPG key ID: 197A5888235FACAC

View file

@ -4507,3 +4507,44 @@ (define-public r-quasr
reads, over creation of alignments and quality control plots, to the
quantification of genomic regions of interest.")
(license license:gpl2)))
(define-public r-rqc
(package
(name "r-rqc")
(version "1.18.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "Rqc" version))
(sha256
(base32
"09kyn5nc2fqfdm3q07h0x2jyh24vsq5sxxm63ir1lvv250lmal4g"))))
(properties `((upstream-name . "Rqc")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-biocparallel" ,r-biocparallel)
("r-biocstyle" ,r-biocstyle)
("r-biostrings" ,r-biostrings)
("r-biovizbase" ,r-biovizbase)
("r-genomicalignments" ,r-genomicalignments)
("r-genomicfiles" ,r-genomicfiles)
("r-ggplot2" ,r-ggplot2)
("r-iranges" ,r-iranges)
("r-knitr" ,r-knitr)
("r-markdown" ,r-markdown)
("r-plyr" ,r-plyr)
("r-rcpp" ,r-rcpp)
("r-reshape2" ,r-reshape2)
("r-rsamtools" ,r-rsamtools)
("r-s4vectors" ,r-s4vectors)
("r-shiny" ,r-shiny)
("r-shortread" ,r-shortread)))
(home-page "https://github.com/labbcb/Rqc")
(synopsis "Quality control tool for high-throughput sequencing data")
(description
"Rqc is an optimized tool designed for quality control and assessment of
high-throughput sequencing data. It performs parallel processing of entire
files and produces a report which contains a set of high-resolution
graphics.")
(license license:gpl2+)))