gnu: metabat: Update to 0.26.3.
* gnu/packages/bioinformatics.scm (metabat): Update to 0.26.3. [arguments]: Update include and linking paths accordingly.
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@ -2486,7 +2486,7 @@ (define-public mafft
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(define-public metabat
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(package
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(name "metabat")
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(version "0.26.1")
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(version "0.26.3")
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(source (origin
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(method url-fetch)
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(uri (string-append
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@ -2495,16 +2495,13 @@ (define-public metabat
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(file-name (string-append name "-" version ".tar.bz2"))
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(sha256
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(base32
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"0vgrhbaxg4dkxyax2kbigak7w0arhqvw0szwp6gd9wmyilc44kfa"))))
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"1vpfvgsn8wdsv1g7z73zxcncskx7dy7bw5msg1hhibk25ay11pyg"))))
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(build-system gnu-build-system)
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(arguments
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`(#:phases
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(modify-phases %standard-phases
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(add-after 'unpack 'fix-includes
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(lambda _
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(substitute* "SConstruct"
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(("/include/bam/bam.h")
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"/include/samtools/bam.h"))
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(substitute* "src/BamUtils.h"
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(("^#include \"bam/bam\\.h\"")
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"#include \"samtools/bam.h\"")
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@ -2512,13 +2509,25 @@ (define-public metabat
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"#include \"samtools/sam.h\""))
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(substitute* "src/KseqReader.h"
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(("^#include \"bam/kseq\\.h\"")
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"#include \"samtools/kseq.h\""))
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"#include \"htslib/kseq.h\""))
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#t))
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(add-after 'unpack 'fix-scons
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(lambda _
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(substitute* "SConstruct" ; Do not distribute README
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(("^env\\.Install\\(idir_prefix, 'README\\.md'\\)")
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""))
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(lambda* (#:key inputs #:allow-other-keys)
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(substitute* "SConstruct"
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(("^htslib_dir = 'samtools'")
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(string-append "hitslib_dir = '"
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(assoc-ref inputs "htslib")
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"'"))
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(("^samtools_dir = 'samtools'")
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(string-append "samtools_dir = '"
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(assoc-ref inputs "htslib")
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"'"))
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(("^findStaticOrShared\\('bam', hts_lib")
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(string-append "findStaticOrShared('bam', '"
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(assoc-ref inputs "samtools")
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"/lib'"))
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;; Do not distribute README.
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(("^env\\.Install\\(idir_prefix, 'README\\.md'\\)") ""))
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#t))
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(delete 'configure)
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(replace 'build
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@ -2528,17 +2537,11 @@ (define-public metabat
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(string-append
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"PREFIX="
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(assoc-ref outputs "out"))
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(string-append
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"HTSLIB_DIR="
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(assoc-ref inputs "htslib"))
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(string-append
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"SAMTOOLS_DIR="
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(assoc-ref inputs "samtools"))
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(string-append
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"BOOST_ROOT="
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(assoc-ref inputs "boost"))
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"install"))))
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;; check and install carried out during build phase
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;; Check and install are carried out during build phase.
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(delete 'check)
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(delete 'install))))
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(inputs
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