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gnu: Add r-gviz.

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* gnu/packages/bioinformatics.scm (r-gviz): New variable.
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Ricardo Wurmus 2017-11-07 17:18:47 +01:00
parent 794ff347a9
commit 4272000661
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gnu/packages/bioinformatics.scm
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@ -10034,6 +10034,52 @@ (define-public r-gqtlstats
family of feature/genome hypotheses.")
(license license:artistic2.0)))
(define-public r-gviz
(package
(name "r-gviz")
(version "1.22.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "Gviz" version))
(sha256
(base32
"1lrw65a8426wpxw975wjcaiacpp6fqa00nif1yxigyankbfs23c8"))))
(properties `((upstream-name . "Gviz")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-biomart" ,r-biomart)
("r-biostrings" ,r-biostrings)
("r-biovizbase" ,r-biovizbase)
("r-bsgenome" ,r-bsgenome)
("r-digest" ,r-digest)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicalignments" ,r-genomicalignments)
("r-genomicfeatures" ,r-genomicfeatures)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-lattice" ,r-lattice)
("r-latticeextra" ,r-latticeextra)
("r-matrixstats" ,r-matrixstats)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-rsamtools" ,r-rsamtools)
("r-rtracklayer" ,r-rtracklayer)
("r-s4vectors" ,r-s4vectors)
("r-xvector" ,r-xvector)))
(home-page "https://bioconductor.org/packages/Gviz")
(synopsis "Plotting data and annotation information along genomic coordinates")
(description
"Genomic data analyses requires integrated visualization of known genomic
information and new experimental data. Gviz uses the biomaRt and the
rtracklayer packages to perform live annotation queries to Ensembl and UCSC
and translates this to e.g. gene/transcript structures in viewports of the
grid graphics package. This results in genomic information plotted together
with your data.")
(license license:artistic2.0)))
(define-public r-qvalue
(package
(name "r-qvalue")