gnu: Add r-tilingarray.

* gnu/packages/bioconductor.scm (r-tilingarray): New variable.
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Mădălin Ionel Patrașcu 2023-02-02 03:26:53 +01:00 committed by Ricardo Wurmus
parent c738ab4805
commit 372843576d
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@ -14989,6 +14989,47 @@ (define-public r-wavcluster
procedures that induce nucleotide substitutions (e.g. BisSeq).")
(license license:gpl2)))
(define-public r-tilingarray
(package
(name "r-tilingarray")
(version "1.76.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "tilingArray" version))
(sha256
(base32
"19bkgblpkcp3w3sdyn82c37gkz1sv3r4d546zpbnh36q2pi3l4zd"))))
(properties `((upstream-name . "tilingArray")))
(build-system r-build-system)
(propagated-inputs
(list r-affy
r-biobase
r-genefilter
r-pixmap
r-rcolorbrewer
r-strucchange
r-vsn))
(home-page "https://bioconductor.org/packages/tilingArray")
(synopsis "Transcript mapping with high-density oligonucleotide tiling arrays")
(description
"The package provides functionality that can be useful for the analysis
of the high-density tiling microarray data (such as from Affymetrix genechips)
or for measuring the transcript abundance and the architecture. The main
functionalities of the package are:
@enumerate
@item the class segmentation for representing partitionings of a linear series
of data;
@item the function segment for fitting piecewise constant models using a
dynamic programming algorithm that is both fast and exact;
@item the function @code{confint} for calculating confidence intervals using
the @code{strucchange} package;
@item the function @code{plotAlongChrom} for generating pretty plots;
@item the function @code{normalizeByReference} for probe-sequence dependent
response adjustment from a (set of) reference hybridizations.
@end enumerate")
(license license:artistic2.0)))
(define-public r-timeseriesexperiment
(package
(name "r-timeseriesexperiment")