gnu: Add adapterremoval.
* gnu/packages/bioinformatics.scm (adapterremoval): New variable.
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@ -14602,3 +14602,40 @@ (define-public arriba
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;; All code is under the Expat license with the exception of
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;; "draw_fusions.R", which is under GPLv3.
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(license (list license:expat license:gpl3))))
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(define-public adapterremoval
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(package
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(name "adapterremoval")
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(version "2.3.0")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/MikkelSchubert/adapterremoval.git")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"1nf3ki5pfzalhrx2fr1y6pfqfi133yj2m7q4fj9irf5fb94bapwr"))))
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(build-system gnu-build-system)
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(arguments
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`(#:make-flags (list "COLOR_BUILD=no"
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(string-append "PREFIX="
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(assoc-ref %outputs "out")))
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#:test-target "test"
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#:phases
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(modify-phases %standard-phases
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(delete 'configure))))
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(inputs
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`(("zlib" ,zlib)))
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(home-page "https://adapterremoval.readthedocs.io/")
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(synopsis "Rapid sequence adapter trimming, identification, and read merging")
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(description
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"This program searches for and removes remnant adapter sequences from
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@dfn{High-Throughput Sequencing} (HTS) data and (optionally) trims low quality
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bases from the 3' end of reads following adapter removal. AdapterRemoval can
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analyze both single end and paired end data, and can be used to merge
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overlapping paired-ended reads into (longer) consensus sequences.
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Additionally, the AdapterRemoval may be used to recover a consensus adapter
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sequence for paired-ended data, for which this information is not available.")
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(license license:gpl3+)))
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