gnu: Add r-giotto.

* gnu/packages/bioinformatics.scm (r-giotto): New variable.
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Ricardo Wurmus 2022-04-26 09:47:51 +02:00
parent b79431b5e9
commit 33fe027f91
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@ -11972,6 +11972,64 @@ (define-public r-cytobackbone
is then merged.")
(license license:gpl2))))
(define-public r-giotto
(let ((commit "68d7390dce87223cac11d4d8f31705fe0144d011")
(revision "1"))
(package
(name "r-giotto")
(version (git-version "1.1.1" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/RubD/Giotto/")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32 "0mv60khc05wrxzr4ir6cirn7dpqvgwan5hm00lmafsyalr51nf5i"))))
(properties `((upstream-name . "Giotto")))
(build-system r-build-system)
(propagated-inputs
(list r-clusterr
r-complexheatmap
r-cowplot
r-data-table
r-dbscan
r-deldir
r-farver
r-fitdistrplus
r-ggdendro
r-ggplot2
r-ggraph
r-ggrepel
r-igraph
r-irlba
r-lfa
r-limma
r-magick
r-magrittr
r-matrix
r-matrixstats
r-plotly
r-qvalue
r-r-utils
r-rcolorbrewer
r-rcpp
r-reshape2
r-reticulate
r-rfast
r-rlang
r-rtsne
r-scales
r-uwot))
(native-inputs (list r-knitr))
(home-page "https://github.com/RubD/Giotto/")
(synopsis "Spatial single-cell transcriptomics toolbox")
(description
"This package provides a toolbox to process, analyze and visualize
spatial single-cell expression data.")
(license license:expat))))
(define-public gffread
;; We cannot use the tagged release because it is not in sync with gclib.
;; See https://github.com/gpertea/gffread/issues/26