gnu: Add r-seuratdisk.

* gnu/packages/cran.scm (r-seuratdisk): New variable.
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Ricardo Wurmus 2021-10-18 12:28:55 +02:00
parent 88badc074a
commit 332177cd2d
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@ -28581,6 +28581,49 @@ (define-public r-seurat
discovery of differentially expressed genes and markers.")
(license license:gpl3)))
(define-public r-seuratdisk
(let ((commit "163f1aade5bac38ed1e9e9c912283a7e74781610")
(revision "1"))
(package
(name "r-seuratdisk")
(version (git-version "0.0.0.9019" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/mojaveazure/seurat-disk")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32 "1d1v8qi6kknzy5fj6bl8akwy74h5h143i00lyidsnqjbwp9n4qnw"))))
(properties `((upstream-name . "SeuratDisk")))
(build-system r-build-system)
(propagated-inputs
`(("r-cli" ,r-cli)
("r-crayon" ,r-crayon)
("r-hdf5r" ,r-hdf5r)
("r-matrix" ,r-matrix)
("r-r6" ,r-r6)
("r-rlang" ,r-rlang)
("r-seurat" ,r-seurat)
("r-seuratobject" ,r-seuratobject)
("r-stringi" ,r-stringi)
("r-withr" ,r-withr)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://github.com/mojaveazure/seurat-disk")
(synopsis "Interfaces for HDF5-based single cell file formats")
(description
"The h5Seurat file format is specifically designed for the storage and
analysis of multi-modal single-cell and spatially-resolved expression
experiments, for example, from CITE-seq or 10X Visium technologies. It holds
all molecular information and associated metadata, including (for example)
nearest-neighbor graphs, dimensional reduction information, spatial
coordinates and image data, and cluster labels. This package also supports
rapid and on-disk conversion between h5Seurat and AnnData objects, with the
goal of enhancing interoperability between Seurat and Scanpy.")
(license license:gpl3))))
(define-public r-phangorn
(package
(name "r-phangorn")