gnu: python-numcodecs: Unbundle c-blosc.
* gnu/packages/python-xyz.scm (python-numcodecs)[source]: Add snippet to remove bundled c-blosc sources and pre-built Cython files. [arguments]: Add build phase 'disable-avx2 and 'unbundle; replace 'check phase to run pytest; disable tests. [inputs]: Add c-blosc, lz4, zlib, and zstd. [native-inputs]: Add python-cython.
This commit is contained in:
parent
7850856591
commit
30474f25d0
|
@ -22098,13 +22098,53 @@ (define-public python-numcodecs
|
|||
(uri (pypi-uri "numcodecs" version))
|
||||
(sha256
|
||||
(base32
|
||||
"0kbfr8pl3x9glsypbq8hzim003f16ml1b1cvgrh4w1sdvgal6j7g"))))
|
||||
"0kbfr8pl3x9glsypbq8hzim003f16ml1b1cvgrh4w1sdvgal6j7g"))
|
||||
(modules '((guix build utils)))
|
||||
(snippet
|
||||
'(begin
|
||||
(delete-file-recursively "c-blosc")
|
||||
(for-each delete-file '("numcodecs/blosc.c"
|
||||
"numcodecs/compat_ext.c"
|
||||
"numcodecs/lz4.c"
|
||||
"numcodecs/vlen.c"
|
||||
"numcodecs/zstd.c"))))))
|
||||
(build-system python-build-system)
|
||||
(arguments
|
||||
`(#:tests? #false ; TODO: unclear why numcodecs.* are not found
|
||||
#:phases
|
||||
(modify-phases %standard-phases
|
||||
(add-after 'unpack 'disable-avx2
|
||||
(lambda _
|
||||
(setenv "DISABLE_NUMCODECS_AVX2" "1")))
|
||||
(add-after 'unpack 'unbundle
|
||||
(lambda _
|
||||
(substitute* "setup.py"
|
||||
(("sources=sources \\+ blosc_sources,")
|
||||
"sources=sources,")
|
||||
(("extra_compile_args=extra_compile_args")
|
||||
"extra_compile_args=list(base_compile_args)")
|
||||
(("'numcodecs.zstd',")
|
||||
"'numcodecs.zstd', libraries=['zstd'], ")
|
||||
(("'numcodecs.lz4',")
|
||||
"'numcodecs.lz4', libraries=['lz4'], ")
|
||||
(("'numcodecs.blosc',")
|
||||
"'numcodecs.blosc', libraries=['blosc'], "))))
|
||||
(replace 'check
|
||||
(lambda* (#:key tests? inputs outputs #:allow-other-keys)
|
||||
(when tests?
|
||||
(add-installed-pythonpath inputs outputs)
|
||||
(invoke "pytest" "-vv")))))))
|
||||
(inputs
|
||||
`(("c-blosc" ,c-blosc)
|
||||
("lz4" ,lz4)
|
||||
("zlib" ,zlib)
|
||||
("zstd" ,zstd "lib")))
|
||||
(propagated-inputs
|
||||
`(("python-numpy" ,python-numpy)
|
||||
("python-msgpack" ,python-msgpack)))
|
||||
(native-inputs
|
||||
`(("python-pytest" ,python-pytest)
|
||||
`(("python-cython" ,python-cython)
|
||||
("python-pytest" ,python-pytest)
|
||||
("python-setuptools-scm" ,python-setuptools-scm)))
|
||||
(home-page "https://github.com/zarr-developers/numcodecs")
|
||||
(synopsis "Buffer compression and transformation codecs")
|
||||
|
|
Loading…
Reference in a new issue