gnu: python2-bx-python: Update to 0.8.2.

* gnu/packages/bioinformatics.scm (python2-bx-python): Update to 0.8.2.
[source]: Remove obsolete snippet.
[inputs]: Move python2-numpy from here...
[propagated-inputs]: ...to here; add python2-six.
[native-inputs]: Add python2-lzo and python2-cython.
[home-page]: Update to new home at Github.
This commit is contained in:
Ricardo Wurmus 2018-10-21 12:33:01 +02:00
parent 1d18ee6dfd
commit 2ba2d62c69
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@ -1477,31 +1477,27 @@ (define-public bwa-pssm
(define-public python2-bx-python
(package
(name "python2-bx-python")
(version "0.7.3")
(version "0.8.2")
(source (origin
(method url-fetch)
(uri (pypi-uri "bx-python" version))
(sha256
(base32
"15z2w3bvnc0n4qmb9bd6d8ylc2h2nj883x2w9iixf4x3vki9b22i"))
(modules '((guix build utils)))
(snippet
'(begin
(substitute* "setup.py"
;; remove dependency on outdated "distribute" module
(("^from distribute_setup import use_setuptools") "")
(("^use_setuptools\\(\\)") ""))
#t))))
"11kksg2rbzihpmcid823xvg42xi88m7sz58rzk29abybkxy0rszs"))))
(build-system python-build-system)
(arguments
`(#:tests? #f ;tests fail because test data are not included
#:python ,python-2))
(inputs
(propagated-inputs
`(("python-numpy" ,python2-numpy)
("zlib" ,zlib)))
("python-six" ,python2-six)))
(inputs
`(("zlib" ,zlib)))
(native-inputs
`(("python-nose" ,python2-nose)))
(home-page "http://bitbucket.org/james_taylor/bx-python/")
`(("python-lzo" ,python2-lzo)
("python-nose" ,python2-nose)
("python-cython" ,python2-cython)))
(home-page "https://github.com/bxlab/bx-python")
(synopsis "Tools for manipulating biological data")
(description
"bx-python provides tools for manipulating biological data, particularly