gnu: r-gviz: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-gviz): Move from here... * gnu/packages/bioconductor.scm (r-gviz): ...to here.
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2 changed files with 49 additions and 49 deletions
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@ -9241,6 +9241,55 @@ (define-public r-catalyst
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standards, ii) single-cell deconvolution, and iii) bead-based compensation.")
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standards, ii) single-cell deconvolution, and iii) bead-based compensation.")
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(license license:gpl2+)))
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(license license:gpl2+)))
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(define-public r-gviz
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(package
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(name "r-gviz")
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(version "1.34.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "Gviz" version))
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(sha256
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(base32
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"0v7bz46b91dnrr55ah42ljj1i2xs3090s4w0lw8098pag00p4vh2"))))
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(properties `((upstream-name . "Gviz")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-annotationdbi" ,r-annotationdbi)
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("r-biobase" ,r-biobase)
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("r-biocgenerics" ,r-biocgenerics)
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("r-biomart" ,r-biomart)
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("r-biostrings" ,r-biostrings)
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("r-biovizbase" ,r-biovizbase)
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("r-bsgenome" ,r-bsgenome)
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("r-digest" ,r-digest)
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("r-ensembldb" ,r-ensembldb)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicalignments" ,r-genomicalignments)
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("r-genomicfeatures" ,r-genomicfeatures)
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("r-genomicranges" ,r-genomicranges)
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("r-iranges" ,r-iranges)
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("r-lattice" ,r-lattice)
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("r-latticeextra" ,r-latticeextra)
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("r-matrixstats" ,r-matrixstats)
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("r-rcolorbrewer" ,r-rcolorbrewer)
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("r-rsamtools" ,r-rsamtools)
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("r-rtracklayer" ,r-rtracklayer)
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("r-s4vectors" ,r-s4vectors)
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("r-xvector" ,r-xvector)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://bioconductor.org/packages/Gviz")
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(synopsis "Plotting data and annotation information along genomic coordinates")
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(description
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"Genomic data analyses requires integrated visualization of known genomic
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information and new experimental data. Gviz uses the biomaRt and the
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rtracklayer packages to perform live annotation queries to Ensembl and UCSC
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and translates this to e.g. gene/transcript structures in viewports of the
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grid graphics package. This results in genomic information plotted together
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with your data.")
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(license license:artistic2.0)))
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(define-public r-gwascat
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(define-public r-gwascat
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(package
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(package
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(name "r-gwascat")
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(name "r-gwascat")
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@ -10785,55 +10785,6 @@ (define-public r-gqtlstats
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family of feature/genome hypotheses.")
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family of feature/genome hypotheses.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-gviz
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(package
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(name "r-gviz")
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(version "1.34.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "Gviz" version))
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(sha256
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(base32
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"0v7bz46b91dnrr55ah42ljj1i2xs3090s4w0lw8098pag00p4vh2"))))
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(properties `((upstream-name . "Gviz")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-annotationdbi" ,r-annotationdbi)
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("r-biobase" ,r-biobase)
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("r-biocgenerics" ,r-biocgenerics)
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("r-biomart" ,r-biomart)
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("r-biostrings" ,r-biostrings)
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("r-biovizbase" ,r-biovizbase)
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("r-bsgenome" ,r-bsgenome)
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("r-digest" ,r-digest)
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("r-ensembldb" ,r-ensembldb)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicalignments" ,r-genomicalignments)
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("r-genomicfeatures" ,r-genomicfeatures)
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("r-genomicranges" ,r-genomicranges)
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("r-iranges" ,r-iranges)
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("r-lattice" ,r-lattice)
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("r-latticeextra" ,r-latticeextra)
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("r-matrixstats" ,r-matrixstats)
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("r-rcolorbrewer" ,r-rcolorbrewer)
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("r-rsamtools" ,r-rsamtools)
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("r-rtracklayer" ,r-rtracklayer)
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("r-s4vectors" ,r-s4vectors)
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("r-xvector" ,r-xvector)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://bioconductor.org/packages/Gviz")
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(synopsis "Plotting data and annotation information along genomic coordinates")
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(description
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"Genomic data analyses requires integrated visualization of known genomic
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information and new experimental data. Gviz uses the biomaRt and the
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rtracklayer packages to perform live annotation queries to Ensembl and UCSC
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and translates this to e.g. gene/transcript structures in viewports of the
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grid graphics package. This results in genomic information plotted together
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with your data.")
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(license license:artistic2.0)))
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(define-public r-dropbead
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(define-public r-dropbead
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(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
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(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
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(revision "2"))
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(revision "2"))
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