gnu: Add r-cssam.

* gnu/packages/bioinformatics.scm (r-cssam): New variable.
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Ricardo Wurmus 2018-09-24 13:23:44 +02:00 committed by Ricardo Wurmus
parent a434730f2e
commit 28829c040f
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@ -13793,3 +13793,34 @@ (define-public r-xbioc
common tasks in the analysis of omics data, leveraging and enhancing features common tasks in the analysis of omics data, leveraging and enhancing features
provided by Bioconductor packages.") provided by Bioconductor packages.")
(license license:gpl3+)))) (license license:gpl3+))))
(define-public r-cssam
(let ((revision "1")
(commit "9ec58c982fa551af0d80b1a266890d92954833f2"))
(package
(name "r-cssam")
(version (git-version "1.4" revision commit))
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/shenorrLab/csSAM.git")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"128syf9v39gk0z3ip000qpsjbg6l1siyq6c8b0hz41dzg5achyb3"))))
(build-system r-build-system)
(propagated-inputs
`(("r-formula" ,r-formula)
("r-ggplot2" ,r-ggplot2)
("r-pkgmaker" ,r-pkgmaker)
("r-plyr" ,r-plyr)
("r-rngtools" ,r-rngtools)
("r-scales" ,r-scales)))
(home-page "https://github.com/shenorrLab/csSAM/")
(synopsis "Cell type-specific statistical analysis of microarray")
(description "This package implements the method csSAM that computes
cell-specific differential expression from measured cell proportions using
SAM.")
;; Any version
(license license:lgpl2.1+))))