gnu: Add r-motiv.
* gnu/packages/bioconductor.scm (r-motiv): New variable.
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@ -3209,3 +3209,34 @@ (define-public r-rgadem
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"rGADEM is an efficient de novo motif discovery tool for large-scale
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genomic sequence data.")
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(license license:artistic2.0)))
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(define-public r-motiv
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(package
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(name "r-motiv")
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(version "1.38.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "MotIV" version))
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(sha256
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(base32
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"1qrpydwc5bn8f0843qkyhw6920xk8kvq452ird0ij96g6faiv9a8"))))
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(properties `((upstream-name . "MotIV")))
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(build-system r-build-system)
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(inputs
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`(("gsl" ,gsl)))
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(propagated-inputs
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`(("r-biocgenerics" ,r-biocgenerics)
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("r-biostrings" ,r-biostrings)
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("r-iranges" ,r-iranges)
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("r-lattice" ,r-lattice)
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("r-rgadem" ,r-rgadem)
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("r-s4vectors" ,r-s4vectors)))
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(home-page "https://bioconductor.org/packages/MotIV/")
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(synopsis "Motif identification and validation")
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(description
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"This package is used for the identification and validation of sequence
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motifs. It makes use of STAMP for comparing a set of motifs to a given
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database (e.g. JASPAR). It can also be used to visualize motifs, motif
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distributions, modules and filter motifs.")
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(license license:gpl2)))
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