gnu: python-pytorch: Update to 1.11.0.

* gnu/packages/machine-learning.scm (python-pytorch): Update to 1.11.0.
[source](snippet): Remove now unnecessary "caffe2/onnx/backend.cc"
substitution.
[arguments]: Add 'remove-caffe2-onnx-scripts' phase.
* gnu/packages/patches/python-pytorch-runpath.patch,
gnu/packages/patches/python-pytorch-system-libraries.patch: Update.

gnu/packages/machine-learning.scm

@@ -2869,7 +2869,7 @@ (define-public xnnpack
 (define-public python-pytorch
   (package
     (name "python-pytorch")
-    (version "1.10.2")
+    (version "1.11.0")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -2879,7 +2879,7 @@ (define-public python-pytorch
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "15fi3nr7fx2zc9j2xf0jq627zfmnvs8hijyifg9769arm8kfijs1"))
+                "1zbk7y74r0ycsfa7x59jnhwhs1gj5rs3n89p15y0212iszgbljq8"))
               (patches (search-patches "python-pytorch-system-libraries.patch"
                                        "python-pytorch-runpath.patch"))
               (modules '((guix build utils)))
@@ -2899,12 +2899,7 @@ (define-public python-pytorch
                               "gloo" "googletest" "ios-cmake" "NNPACK"
                               "onnx" "protobuf" "pthreadpool"
                               "pybind11" "python-enum" "python-peachpy"
-                              "python-six" "tbb" "XNNPACK" "zstd"))
+                              "python-six" "tbb" "XNNPACK" "zstd"))))))
-
-                  ;; Adjust references to the onnx-optimizer headers.
-                  (substitute* "caffe2/onnx/backend.cc"
-                    (("onnx/optimizer/")
-                     "onnxoptimizer/"))))))
     (build-system python-build-system)
     (arguments
      '(#:phases (modify-phases %standard-phases
@@ -2942,7 +2937,23 @@ (define-public python-pytorch
                       (let ((python-site (site-packages inputs outputs)))
                         (for-each delete-file
                                   (find-files python-site
-                                              "(^test_cpp_rpc|_test)$"))))))
+                                              "(^test_cpp_rpc|_test)$")))))
+                  (add-after 'install 'remove-caffe2-onnx-scripts
+                    (lambda* (#:key outputs #:allow-other-keys)
+                      (let* ((out (assoc-ref outputs "out"))
+                             (bin (string-append out "/bin")))
+                        ;; Remove 'convert-caffe2-to-onnx' and
+                        ;; 'convert-onnx-to-caffe2': they seem to be
+                        ;; deprecated and they cause a failure of the
+                        ;; 'sanity-check' phase:
+                        ;;
+                        ;; ImportError: cannot import name 'metanet_pb2' from partially initialized module 'caffe2.proto' (most likely due to a circular import)
+                        (for-each delete-file
+                                  (find-files bin "^convert-.*caffe2"))
+
+                        (substitute* (find-files out "^entry_points\\.txt$")
+                          (("^convert-.*" all)
+                           (string-append "# " all "\n")))))))
 
        ;; XXX: Tests attempt to download data such as
        ;; <https://raw.githubusercontent.com/pytorch/test-infra/master/stats/slow-tests.json>.
@@ -2977,7 +2988,7 @@ (define-public python-pytorch
            python-future
            python-six
            python-requests
-           onnx ;propagated for its Python modules
+           onnx                             ;propagated for its Python modules
            onnx-optimizer
            cpuinfo))
     (home-page "https://pytorch.org/")

gnu/packages/patches/python-pytorch-runpath.patch

@@ -2,6 +2,21 @@ Libraries (such as 'libtorch_cpu.so') and executables (such as 'torch_shm_manage
 get installed, quite surprisingly, to 'lib/python3.8/site-packages/{bin,lib}'.
 Make sure RUNPATH matches that.
 
+diff --git a/caffe2/CMakeLists.txt b/caffe2/CMakeLists.txt
+index 5b5622f0..30d27e57 100644
+--- a/caffe2/CMakeLists.txt
++++ b/caffe2/CMakeLists.txt
+@@ -1909,7 +1909,7 @@ if(BUILD_PYTHON)
+   if(${BUILDING_WITH_TORCH_LIBS})
+     # site-packages/caffe2/python/caffe2_pybind11_state
+     # site-packages/torch/lib
+-    set(caffe2_pybind11_rpath "${_rpath_portable_origin}/../../torch/lib")
++    set(caffe2_pybind11_rpath $ORIGIN/../../torch/lib)
+   endif(${BUILDING_WITH_TORCH_LIBS})
+ 
+   # Must also include `CMAKE_SHARED_LINKER_FLAGS` in linker flags for
+diff --git a/cmake/Dependencies.cmake b/cmake/Dependencies.cmake
+index ee9cf410..f190e69b 100644
 --- a/cmake/Dependencies.cmake
 +++ b/cmake/Dependencies.cmake
 @@ -4,7 +4,7 @@ if(APPLE)
@@ -13,13 +28,3 @@ Make sure RUNPATH matches that.
  endif(APPLE)
  # Use separate rpaths during build and install phases
  set(CMAKE_SKIP_BUILD_RPATH  FALSE)
-
---- a/caffe2/CMakeLists.txt
-+++ b/caffe2/CMakeLists.txt
-@@ -1797,5 +1797,5 @@ if(BUILD_PYTHON)
-   if(${BUILDING_WITH_TORCH_LIBS})
-     # site-packages/caffe2/python/caffe2_pybind11_state
-     # site-packages/torch/lib
--    set(caffe2_pybind11_rpath "${_rpath_portable_origin}/../../torch/lib")
-+    set(caffe2_pybind11_rpath $ORIGIN/../../torch/lib)
-   endif(${BUILDING_WITH_TORCH_LIBS})

gnu/packages/patches/python-pytorch-system-libraries.patch

@@ -2,10 +2,10 @@ Use our own googletest rather than the bundled one.
 Get NNPACK to use our own PeachPy rather than the bundled one.
 
 diff --git a/caffe2/CMakeLists.txt b/caffe2/CMakeLists.txt
-index 26210cb5..18b6df27 100644
+index d57d7ebb..5b5622f0 100644
 --- a/caffe2/CMakeLists.txt
 +++ b/caffe2/CMakeLists.txt
-@@ -1723,7 +1723,7 @@ if(BUILD_TEST)
+@@ -1736,7 +1736,7 @@ if(BUILD_TEST)
          if(NOT MSVC)
            add_executable(${test_name}_${CPU_CAPABILITY} "${test_src}" ../aten/src/ATen/native/quantized/affine_quantizer_base.cpp)
            # TODO: Get rid of c10 dependency (which is only needed for the implementation of AT_ERROR)
@@ -14,7 +14,7 @@ index 26210cb5..18b6df27 100644
            if(USE_FBGEMM)
              target_link_libraries(${test_name}_${CPU_CAPABILITY} fbgemm)
            endif()
-@@ -1746,7 +1746,7 @@ if(BUILD_TEST)
+@@ -1759,7 +1759,7 @@ if(BUILD_TEST)
    foreach(test_src ${Caffe2_CPU_TEST_SRCS})
      get_filename_component(test_name ${test_src} NAME_WE)
      add_executable(${test_name} "${test_src}")
@@ -23,16 +23,16 @@ index 26210cb5..18b6df27 100644
      if(USE_OPENMP)
        # -fopenmp is a compile time flag and as result not guaranteed
        # to link executable against OpenMP runtime library
-@@ -1769,7 +1769,7 @@ if(BUILD_TEST)
+@@ -1785,7 +1785,7 @@ if(BUILD_TEST)
      foreach(test_src ${Caffe2_GPU_TEST_SRCS})
        get_filename_component(test_name ${test_src} NAME_WE)
-       cuda_add_executable(${test_name} "${test_src}")
+       add_executable(${test_name} "${test_src}")
 -      target_link_libraries(${test_name} torch_library gtest_main)
 +      target_link_libraries(${test_name} torch_library gtest_main gtest)
        target_include_directories(${test_name} PRIVATE $<INSTALL_INTERFACE:include>)
        target_include_directories(${test_name} PRIVATE ${Caffe2_CPU_INCLUDE})
        add_test(NAME ${test_name} COMMAND $<TARGET_FILE:${test_name}>)
-@@ -1787,7 +1787,7 @@ if(BUILD_TEST)
+@@ -1803,7 +1803,7 @@ if(BUILD_TEST)
      foreach(test_src ${Caffe2_VULKAN_TEST_SRCS})
        get_filename_component(test_name ${test_src} NAME_WE)
        add_executable(${test_name} "${test_src}")
@@ -41,7 +41,7 @@ index 26210cb5..18b6df27 100644
        target_include_directories(${test_name} PRIVATE $<INSTALL_INTERFACE:include>)
        target_include_directories(${test_name} PRIVATE ${Caffe2_CPU_INCLUDE})
        add_test(NAME ${test_name} COMMAND $<TARGET_FILE:${test_name}>)
-@@ -1805,7 +1805,7 @@ if(BUILD_TEST)
+@@ -1821,7 +1821,7 @@ if(BUILD_TEST)
      foreach(test_src ${Caffe2_HIP_TEST_SRCS})
        get_filename_component(test_name ${test_src} NAME_WE)
        add_executable(${test_name} "${test_src}")
@@ -51,10 +51,10 @@ index 26210cb5..18b6df27 100644
        target_include_directories(${test_name} PRIVATE ${Caffe2_CPU_INCLUDE} ${Caffe2_HIP_INCLUDE})
        target_compile_options(${test_name} PRIVATE ${HIP_CXX_FLAGS})
 diff --git a/cmake/Dependencies.cmake b/cmake/Dependencies.cmake
-index ca560288..c0696e53 100644
+index 557ab649..ee9cf410 100644
 --- a/cmake/Dependencies.cmake
 +++ b/cmake/Dependencies.cmake
-@@ -684,11 +684,6 @@ if(BUILD_TEST OR BUILD_MOBILE_BENCHMARK OR BUILD_MOBILE_TEST)
+@@ -732,11 +732,6 @@ if(BUILD_TEST OR BUILD_MOBILE_BENCHMARK OR BUILD_MOBILE_TEST)
    # this shouldn't be necessary anymore.
    get_property(INC_DIR_temp DIRECTORY PROPERTY INCLUDE_DIRECTORIES)
    set_property(DIRECTORY PROPERTY INCLUDE_DIRECTORIES "")
@@ -66,7 +66,7 @@ index ca560288..c0696e53 100644
  
    # We will not need to test benchmark lib itself.
    set(BENCHMARK_ENABLE_TESTING OFF CACHE BOOL "Disable benchmark testing as we don't need it.")
-@@ -1537,7 +1532,7 @@ if(CAFFE2_CMAKE_BUILDING_WITH_MAIN_REPO AND NOT INTERN_DISABLE_ONNX)
+@@ -1543,7 +1538,7 @@ if(CAFFE2_CMAKE_BUILDING_WITH_MAIN_REPO AND NOT INTERN_DISABLE_ONNX)
      endif()
      set_property(TARGET onnx_proto PROPERTY IMPORTED_LOCATION ${ONNX_PROTO_LIBRARY})
      message("-- Found onnx: ${ONNX_LIBRARY} ${ONNX_PROTO_LIBRARY}")
@@ -98,10 +98,10 @@ index a41343cb..6075bdd0 100644
 +set(NNPACK_FOUND TRUE)
 +set(USE_NNPACK ON)
 diff --git a/test/cpp/c10d/CMakeLists.txt b/test/cpp/c10d/CMakeLists.txt
-index 2e48773a..a70506ce 100644
+index bf91460c..ef56948f 100644
 --- a/test/cpp/c10d/CMakeLists.txt
 +++ b/test/cpp/c10d/CMakeLists.txt
-@@ -17,14 +17,14 @@ function(c10d_add_test test_src)
+@@ -16,14 +16,14 @@ function(c10d_add_test test_src)
    add_test(NAME ${test_name} COMMAND $<TARGET_FILE:${test_name}>)
  endfunction()
  
@@ -119,7 +119,7 @@ index 2e48773a..a70506ce 100644
    if(INSTALL_TEST)
      install(TARGETS HashStoreTest DESTINATION bin)
    endif()
-@@ -32,11 +32,11 @@ endif()
+@@ -31,11 +31,11 @@ endif()
  
  if(USE_CUDA)
    if(USE_GLOO AND USE_C10D_GLOO)
@@ -133,7 +133,7 @@ index 2e48773a..a70506ce 100644
    endif()
    if(USE_NCCL AND USE_C10D_NCCL)
      # NCCL is a private dependency of libtorch, but the tests include some
-@@ -57,7 +57,7 @@ if(USE_CUDA)
+@@ -56,7 +56,7 @@ if(USE_CUDA)
    endif()
  else()
    if(USE_GLOO AND USE_C10D_GLOO)
@@ -143,10 +143,10 @@ index 2e48773a..a70506ce 100644
  endif()
  
 diff --git a/test/cpp/tensorexpr/CMakeLists.txt b/test/cpp/tensorexpr/CMakeLists.txt
-index 213e99bd..ecaae840 100644
+index 8fc5a0a1..643202f6 100644
 --- a/test/cpp/tensorexpr/CMakeLists.txt
 +++ b/test/cpp/tensorexpr/CMakeLists.txt
-@@ -46,7 +46,7 @@ target_include_directories(tutorial_tensorexpr PRIVATE ${ATen_CPU_INCLUDE})
+@@ -53,7 +53,7 @@ target_include_directories(tutorial_tensorexpr PRIVATE ${ATen_CPU_INCLUDE})
  # pthreadpool header. For some build environment we need add the dependency
  # explicitly.
  if(USE_PTHREADPOOL)