gnu: Add r-conos.

* gnu/packages/bioconductor.scm (r-conos): New variable.
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Mădălin Ionel Patrașcu 2023-02-27 11:28:46 +01:00 committed by Ricardo Wurmus
parent 020e5ac362
commit 1fb43d1d19
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@ -5581,6 +5581,57 @@ (define-public r-complexheatmap
self-defined annotation graphics.")
(license license:gpl2+)))
;; This is a CRAN package, but it depends on r-complexheatmap from
;; Bioconductor.
(define-public r-conos
(package
(name "r-conos")
(version "1.5.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "conos" version))
(sha256
(base32 "1wdhb3jxh4id6xaghawzip8s264g9jxp4i5xy7jfhi67yfxszx6w"))))
(properties `((upstream-name . "conos")))
(build-system r-build-system)
(propagated-inputs
(list r-abind
r-complexheatmap
r-cowplot
r-dendextend
r-dplyr
r-ggplot2
r-ggrepel
r-gridextra
r-igraph
r-irlba
r-leidenalg
r-magrittr
r-matrix
r-n2r
r-r6
r-rcpp
r-rcpparmadillo
r-rcppeigen
r-rcppprogress
r-reshape2
r-rlang
r-rtsne
r-sccore))
(home-page "https://github.com/kharchenkolab/conos")
(synopsis "Clustering on network of samples")
(description
"This package wires together large collections of single-cell RNA-seq
datasets, which allows for both the identification of recurrent cell clusters
and the propagation of information between datasets in multi-sample or
atlas-scale collections. Conos focuses on the uniform mapping of homologous
cell types across heterogeneous sample collections. For instance, users could
investigate a collection of dozens of peripheral blood samples from cancer
patients combined with dozens of controls, which perhaps includes samples of a
related tissue such as lymph nodes.")
(license license:gpl3)))
(define-public r-copywriter
(package
(name "r-copywriter")