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Merge branch 'master' into core-updates

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Andreas Enge 2016-07-24 18:42:56 +02:00
commit 1abdc167d3
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1 changed files with 32 additions and 32 deletions
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64
gnu/packages/bioinformatics.scm
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@ -1831,7 +1831,7 @@ (define-public express-beta-diversity
(define-public fasttree
(package
(name "fasttree")
(version "2.1.8")
(version "2.1.9")
(source (origin
(method url-fetch)
(uri (string-append
@ -1839,7 +1839,7 @@ (define-public fasttree
version ".c"))
(sha256
(base32
"0dzqc9vr9iiiw21y159xfjl2z90vw0y7r4x6456pcaxiy5hd2wmi"))))
"0ljvvw8i1als1wbfzvrf15c3ii2vw9db20a259g6pzg34xyyb97k"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; no "check" target
@ -1848,37 +1848,37 @@ (define-public fasttree
(delete 'unpack)
(delete 'configure)
(replace 'build
(lambda* (#:key source #:allow-other-keys)
(and (zero? (system* "gcc"
"-O3"
"-finline-functions"
"-funroll-loops"
"-Wall"
"-o"
"FastTree"
source
"-lm"))
(zero? (system* "gcc"
"-DOPENMP"
"-fopenmp"
"-O3"
"-finline-functions"
"-funroll-loops"
"-Wall"
"-o"
"FastTreeMP"
source
"-lm")))))
(lambda* (#:key source #:allow-other-keys)
(and (zero? (system* "gcc"
"-O3"
"-finline-functions"
"-funroll-loops"
"-Wall"
"-o"
"FastTree"
source
"-lm"))
(zero? (system* "gcc"
"-DOPENMP"
"-fopenmp"
"-O3"
"-finline-functions"
"-funroll-loops"
"-Wall"
"-o"
"FastTreeMP"
source
"-lm")))))
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
(let ((bin (string-append (assoc-ref outputs "out")
"/bin")))
(mkdir-p bin)
(copy-file "FastTree"
(string-append bin "/FastTree"))
(copy-file "FastTreeMP"
(string-append bin "/FastTreeMP"))
#t))))))
(lambda* (#:key outputs #:allow-other-keys)
(let ((bin (string-append (assoc-ref outputs "out")
"/bin")))
(mkdir-p bin)
(copy-file "FastTree"
(string-append bin "/FastTree"))
(copy-file "FastTreeMP"
(string-append bin "/FastTreeMP"))
#t))))))
(home-page "http://www.microbesonline.org/fasttree")
(synopsis "Infers approximately-maximum-likelihood phylogenetic trees")
(description