From 142313cf0c5aea638851fb6b3856f89beeb6379a Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 3 Nov 2023 19:11:54 +0100 Subject: [PATCH] gnu: Remove r-genomegraphs. This package had been removed from Bioconductor with release 3.11. * gnu/packages/bioconductor.scm (r-genomegraphs): Remove variable. Change-Id: I73cc8cc8546089d91212176939b8c0c0a7afc309 --- gnu/packages/bioconductor.scm | 28 ---------------------------- 1 file changed, 28 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 33d4f1c296..aefba11134 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -18488,34 +18488,6 @@ (define-public r-variantfiltering populations, splice site strength, conservation, etc.") (license license:artistic2.0))) -(define-public r-genomegraphs - (package - (name "r-genomegraphs") - (version "1.46.0") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "GenomeGraphs" version)) - (sha256 - (base32 - "05vavhz936v7cknig2f2mn3fd9fiy54r3swlvifpawramblp1ags")))) - (properties `((upstream-name . "GenomeGraphs"))) - (build-system r-build-system) - (propagated-inputs - (list r-biomart)) - (home-page "https://bioconductor.org/packages/GenomeGraphs/") - (synopsis "Plotting genomic information from Ensembl") - (description - "Genomic data analyses requires integrated visualization of known genomic -information and new experimental data. GenomeGraphs uses the biomaRt package -to perform live annotation queries to Ensembl and translates this to e.g. -gene/transcript structures in viewports of the grid graphics package. This -results in genomic information plotted together with your data. Another -strength of GenomeGraphs is to plot different data types such as array CGH, -gene expression, sequencing and other data, together in one plot using the -same genome coordinate system.") - (license license:artistic2.0))) - (define-public r-variancepartition (package (name "r-variancepartition")