diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 00701c4463..a566279441 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1436,6 +1436,51 @@ (define-public r-celldex single-cell data or deconvolution of bulk RNA-seq.") (license license:gpl3))) +(define-public r-cellid + (package + (name "r-cellid") + (version "1.8.1") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "CelliD" version)) + (sha256 + (base32 + "0vigvqjrlqbi5kviaj8qvyq3v8afgbc5pjrz7zmx2ckf4hdp0g03")))) + (properties `((upstream-name . "CelliD"))) + (build-system r-build-system) + (propagated-inputs + (list r-data-table + r-biocparallel + r-fastmatch + r-fgsea + r-ggplot2 + r-glue + r-irlba + r-matrix + r-matrixstats + r-pbapply + r-rcpp + r-rcpparmadillo + r-reticulate + r-rtsne + r-seurat + r-stringr + r-tictoc + r-singlecellexperiment + r-summarizedexperiment + r-umap)) + (native-inputs (list r-knitr r-scater)) + (home-page "https://bioconductor.org/packages/CelliD") + (synopsis + "Single cell gene signature extraction using multiple correspondence analysis") + (description + "CelliD is a clustering-free method for extracting per-cell gene +signatures from scRNA-seq. CelliD allows unbiased cell identity recognition +across different donors, tissues-of-origin, model organisms and single-cell +omics protocols. The package can also be used to explore functional pathways +enrichment in single cell data.") + (license license:gpl3))) + (define-public r-champdata (package (name "r-champdata")