gnu: Add r-scuttle.

* gnu/packages/bioconductor.scm (r-scuttle): New variable.
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Ricardo Wurmus 2020-11-21 10:23:56 +01:00
parent 10c87ecf77
commit 0e60dda0ae
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@ -8837,6 +8837,40 @@ (define-public r-singlecellexperiment
libraries.")
(license license:gpl3)))
(define-public r-scuttle
(package
(name "r-scuttle")
(version "1.0.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "scuttle" version))
(sha256
(base32
"1k8q3wzq6f6j6wkjp9fy9j214rv98kyvcxnpavk6blqgaxjqwdr6"))))
(properties `((upstream-name . "scuttle")))
(build-system r-build-system)
(propagated-inputs
`(("r-beachmat" ,r-beachmat)
("r-biocgenerics" ,r-biocgenerics)
("r-biocparallel" ,r-biocparallel)
("r-delayedarray" ,r-delayedarray)
("r-delayedmatrixstats" ,r-delayedmatrixstats)
("r-matrix" ,r-matrix)
("r-rcpp" ,r-rcpp)
("r-s4vectors" ,r-s4vectors)
("r-singlecellexperiment" ,r-singlecellexperiment)
("r-summarizedexperiment" ,r-summarizedexperiment)))
(native-inputs `(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/scuttle")
(synopsis "Single-cell RNA-Seq analysis utilities")
(description
"This package provides basic utility functions for performing single-cell
analyses, focusing on simple normalization, quality control and data
transformations. It also provides some helper functions to assist development
of other packages.")
(license license:gpl3)))
(define-public r-scater
(package
(name "r-scater")