gnu: Add r-bsseq.

* gnu/packages/bioconductor.scm (r-bsseq): New variable.
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Ricardo Wurmus 2021-09-07 14:39:32 +02:00
parent b63fb6a2e6
commit 0d1990b986
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@ -14510,6 +14510,52 @@ (define-public r-biotmle
ensemble machine learning for the estimation of nuisance functions.")
(license license:expat)))
(define-public r-bsseq
(package
(name "r-bsseq")
(version "1.28.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "bsseq" version))
(sha256
(base32
"1xpv85hr681kkkilsnasndkszwmzbzq11y0lff4na2ilsm7sqmmi"))))
(properties `((upstream-name . "bsseq")))
(build-system r-build-system)
(propagated-inputs
`(("r-beachmat" ,r-beachmat)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-biocparallel" ,r-biocparallel)
("r-biostrings" ,r-biostrings)
("r-bsgenome" ,r-bsgenome)
("r-data-table" ,r-data-table)
("r-delayedarray" ,r-delayedarray)
("r-delayedmatrixstats" ,r-delayedmatrixstats)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicranges" ,r-genomicranges)
("r-gtools" ,r-gtools)
("r-hdf5array" ,r-hdf5array)
("r-iranges" ,r-iranges)
("r-limma" ,r-limma)
("r-locfit" ,r-locfit)
("r-permute" ,r-permute)
("r-r-utils" ,r-r-utils)
("r-rcpp" ,r-rcpp)
("r-rhdf5" ,r-rhdf5)
("r-s4vectors" ,r-s4vectors)
("r-scales" ,r-scales)
("r-summarizedexperiment" ,r-summarizedexperiment)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://github.com/hansenlab/bsseq")
(synopsis "Analyze, manage and store bisulfite sequencing data")
(description
"This package provides a collection of tools for analyzing and
visualizing bisulfite sequencing data.")
(license license:artistic2.0)))
(define-public r-tximeta
(package
(name "r-tximeta")