From 0ad89a84c3e86093b4c17fd926a04cfc0228c6da Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= Date: Mon, 27 Jun 2022 23:16:20 +0200 Subject: [PATCH] gnu: Add r-bac. * gnu/packages/bioconductor.scm (r-bac): New variable. --- gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 784ddbfae3..2e13a86774 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2380,6 +2380,30 @@ (define-public r-basespacer rich environment of statistical and data analysis tools.") (license license:asl2.0))) +(define-public r-bac + (package + (name "r-bac") + (version "1.56.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "BAC" version)) + (sha256 + (base32 + "0dkw7438d2sf6nb577dnzija54qs0nhlr47lb73li60fhlnvqmh2")))) + (properties `((upstream-name . "BAC"))) + (build-system r-build-system) + (home-page "https://bioconductor.org/packages/BAC") + (synopsis "Bayesian analysis of Chip-chip experiment") + (description + "This package uses a Bayesian hierarchical model to detect enriched +regions from ChIP-chip experiments. The common goal in analyzing this +ChIP-chip data is to detect DNA-protein interactions from ChIP-chip +experiments. The BAC package has mainly been tested with Affymetrix tiling +array data. However, we expect it to work with other platforms (e.g. Agilent, +Nimblegen, cDNA, etc.). Note that BAC does not deal with normalization, so +you will have to normalize your data beforehand.") + (license license:artistic2.0))) + (define-public r-biocversion (package (name "r-biocversion")