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gnu: dealii: Update to 9.5.1.

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* gnu/packages/maths.scm (dealii): Update to 9.5.1.
[propagated-inputs]: Add kokkos.
[arguments]<#:phases>: Add 'unset-cpath' phase.
(dealii-openmpi)[propagated-inputs]: Remove kokkos.
[arguments]<#:phases>: Delete 'unset-cpath' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
This commit is contained in:
Paul A. Patience 2023-10-13 12:35:45 +00:00 committed by Ludovic Courtès
parent 50b82ea44e
commit 08c55c03bf
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GPG key ID: 090B11993D9AEBB5
1 changed files with 24 additions and 5 deletions
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29
gnu/packages/maths.scm
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@ -114,6 +114,7 @@ (define-module (gnu packages maths)
#:use-module (gnu packages coq)
#:use-module (gnu packages curl)
#:use-module (gnu packages cyrus-sasl)
#:use-module (gnu packages cpp)
#:use-module (gnu packages datamash)
#:use-module (gnu packages dbm)
#:use-module (gnu packages documentation)
@ -6562,17 +6563,17 @@ (define trilinos-for-dealii-openmpi
(define-public dealii
(package
(name "dealii")
(version "9.4.0")
(version "9.5.1")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/dealii/dealii/releases/"
"download/v" version "/dealii-" version ".tar.gz"))
(sha256
(base32 "0v73q6f35f2yrjihaq6vh9lma07qc4cdv75nwmc3c5yrdh07g1i3"))
(base32 "0phgcfnil4rb41xipsdbm4lxrymlqxbiccakg3pkm3a8wqsva658"))
(modules '((guix build utils)))
(snippet
;; Remove bundled boost, muparser, TBB and UMFPACK.
;; Remove bundled boost, Kokkos, muparser, TBB and UMFPACK.
#~(delete-file-recursively "bundled"))))
(build-system cmake-build-system)
(outputs '("out" "doc"))
@ -6596,6 +6597,7 @@ (define-public dealii
;; the requisite interpreter to its native inputs.
(list boost
hdf5
kokkos
suitesparse ; For UMFPACK.
sundials
tbb))
@ -6620,6 +6622,18 @@ (define-public dealii
"/examples")))
#:phases
#~(modify-phases %standard-phases
;; Without unsetting CPATH, the build fails with the following
;; error (similar to <https://bugs.gnu.org/30756>):
;;
;; /gnu/store/…-gcc-11.3.0/include/c++/math.h:30:16: fatal error: math.h: No such file or directory
;; 30 | # include_next <math.h>
;; | ^~~~~~~~
;;
;; Why does unsetting CPATH magically fix the error?
;; TODO: Properly fix this issue.
(add-after 'set-paths 'unset-cpath
(lambda _
(unsetenv "CPATH")))
(add-after 'install 'remove-build-logs
;; These build logs leak the name of the build directory by
;; storing the values of CMAKE_SOURCE_DIR and
@ -6651,7 +6665,7 @@ (define-public dealii-openmpi
scalapack)))
(propagated-inputs
(modify-inputs (package-propagated-inputs dealii)
(delete "hdf5" "sundials")
(delete "hdf5" "kokkos" "sundials")
(prepend hdf5-parallel-openmpi
openmpi
p4est-openmpi
@ -6662,7 +6676,12 @@ (define-public dealii-openmpi
(arguments
(substitute-keyword-arguments (package-arguments dealii)
((#:configure-flags flags)
#~(cons "-DDEAL_II_WITH_MPI=ON" #$flags))))
#~(cons "-DDEAL_II_WITH_MPI=ON" #$flags))
((#:phases phases #~%standard-phases)
#~(modify-phases #$phases
;; The build failure fixed by this phase does not manifest when
;; Kokkos is included via Trilinos.
(delete 'unset-cpath)))))
(synopsis "Finite element library (with MPI support)")))
(define-public flann