From 051e8e1a5bec01952012cf7f1903cd72add0e25c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 29 Mar 2019 14:59:12 +0100 Subject: [PATCH] gnu: Add r-rgadem. * gnu/packages/bioconductor.scm (r-rgadem): New variable. --- gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 48c6009864..6df46ef379 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -3184,3 +3184,28 @@ (define-public r-bacon constructs an empirical null distribution using a Gibbs Sampling algorithm by fitting a three-component normal mixture on z-scores.") (license license:gpl2+))) + +(define-public r-rgadem + (package + (name "r-rgadem") + (version "2.30.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "rGADEM" version)) + (sha256 + (base32 + "1a3mvxabp7yb275cv1wr0rzyvjhnsaysk2hnmll4z4cci171z2j2")))) + (properties `((upstream-name . "rGADEM"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biostrings" ,r-biostrings) + ("r-bsgenome" ,r-bsgenome) + ("r-iranges" ,r-iranges) + ("r-seqlogo" ,r-seqlogo))) + (home-page "https://bioconductor.org/packages/rGADEM/") + (synopsis "De novo sequence motif discovery") + (description + "rGADEM is an efficient de novo motif discovery tool for large-scale +genomic sequence data.") + (license license:artistic2.0)))