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gnu: python-scikit-image: Enable tests.

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* gnu/packages/python-science.scm (python-scikit-image)[arguments]: Add phases
related to tests.
[native-inputs]: Add python-codecov, python-flake8, python-pytest,
python-pytest-cov, python-pytest-localserver, python-wheel.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
This commit is contained in:
Vinicius Monego 2021-03-09 12:51:14 -03:00 committed by Nicolas Goaziou
parent 36062f16b6
commit 0455c19fa5
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1 changed files with 27 additions and 3 deletions
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gnu/packages/python-science.scm
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@ -36,6 +36,8 @@ (define-module (gnu packages python-science)
#:use-module (gnu packages maths)
#:use-module (gnu packages perl)
#:use-module (gnu packages python)
#:use-module (gnu packages python-build)
#:use-module (gnu packages python-check)
#:use-module (gnu packages python-web)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages sphinx)
@ -249,9 +251,25 @@ (define-public python-scikit-image
(base32 "0wgisa03smhrphcjnhq7waa5vyyd32b67hblapjbqrqqj751idpv"))))
(build-system python-build-system)
(arguments
;; TODO: Some tests require running X11 server. Disable them?
'(#:tests? #f))
`(#:phases
(modify-phases %standard-phases
(add-before 'build 'change-home-dir
(lambda _
;; Change from /homeless-shelter to /tmp for write permission.
(setenv "HOME" "/tmp")
#t))
(replace 'build
(lambda _
(invoke "make")))
(replace 'check
(lambda _
;; The following tests require online data.
(invoke "python" "-m" "pytest" "skimage" "--doctest-modules" "-k"
(string-append "not test_ndim"
" and not test_skin")))))))
;; See requirements/ for the list of build and run time requirements.
;; NOTE: scikit-image has an optional dependency on python-pooch, however
;; propagating it would enable many more tests that require online data.
(propagated-inputs
`(("python-cloudpickle" ,python-cloudpickle)
("python-dask" ,python-dask)
@ -264,7 +282,13 @@ (define-public python-scikit-image
("python-scipy" ,python-scipy)
("python-tifffile" ,python-tifffile)))
(native-inputs
`(("python-cython" ,python-cython)))
`(("python-codecov" ,python-codecov)
("python-cython" ,python-cython)
("python-flake8" ,python-flake8)
("python-pytest" ,python-pytest)
("python-pytest-cov" ,python-pytest-cov)
("python-pytest-localserver" ,python-pytest-localserver)
("python-wheel" ,python-wheel)))
(home-page "https://scikit-image.org/")
(synopsis "Image processing in Python")
(description